HIV Target gene Detail Information

> SPECC1L-ADORA2A Gene Search Result


Gene Information
Gene Name SPECC1L-ADORA2A
Gene ID 101730217
Gene Full Name SPECC1L-ADORA2A readthrough (NMD candidate)
Gene Alias -
Transcripts ENSG00000258555
Virus HIV
Gene Type ncRNA
HGNC ID HGNC:49185
Summary This locus represents naturally occurring readthrough transcription between the neighboring SPECC1L (sperm antigen with calponin homology and coiled-coil domains 1-like) and ADORA2A (adenosine A2a receptor) genes on chromosome 22. The readthrough transcript is a candidate for nonsense-mediated mRNA decay (NMD) and is unlikely to produce a protein product. [provided by RefSeq, Jun 2013]
Target gene [SPECC1L-ADORA2A] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
4001668 chr22 135 7 0 142 View
4002227 chr22 50 18 36 104 View
4002381 chr22 10 85 2 97 View
4002639 chr22 82 4 0 86 View
4003407 chr22 58 4 0 62 View
4006509 chr22 13 7 4 24 View
4010317 chr22 7 2 0 9 View
4012110 chr22 5 0 0 5 View

Target gene [SPECC1L-ADORA2A] related to Omics data
Data ID Experiment type Sample number Platform
C
  GSE221688 		Chip-seq;scATAC-Seq;scRNA-Seq 12 Illumina NovaSeq 6000 (Homo sapiens)
GSE144332 RNA-seq 75 NextSeq 550 (Homo sapiens)
C
  GSE165705 		Chip-seq 30 Illumina NovaSeq 6000 (Homo sapiens)
GSE164264 RNA-seq 6 BGISEQ-500 (Homo sapiens)
C
  GSE30738 		Chip-seq 2 Illumina Genome Analyzer II (Homo sapiens)
GSE262621 RNA-seq 70 Illumina NovaSeq 6000 (Homo sapiens)
GSE128121 RNA-seq 16 Illumina HiSeq 4000 (Homo sapiens)
GSE162914 RNA-seq 211 Illumina HiSeq 2500 (Homo sapiens)
GSE279982 Methylation profiling (Array) 576 Infinium MethylationEPIC
C
  GSE144329 		ATAC-seq 96 NextSeq 550 (Homo sapiens)
GSE205204 RNA-seq 14 Illumina NovaSeq 6000 (Homo sapiens)
GSE125686 RNA-seq 62 Illumina HiSeq 2000 (Homo sapiens);Illumina HiSeq 2500 (Homo sapiens);Illumina NextSeq 500 (Homo sapiens)
C
  GSE220859 		Chip-seq 11 Illumina NovaSeq 6000 (Homo sapiens)
GSE165708 RNA-seq 100 Illumina HiSeq 4000 (Homo sapiens)
C
  GSE211651 		Chip-seq;RNA-seq;PRO-seq 39 Illumina NextSeq 500 (Homo sapiens);Illumina NovaSeq 6000 (Homo sapiens)
C
  GSE100376 		ATAC-seq 24 Illumina NextSeq 500 (Homo sapiens)
GSE167211 RNA-seq 1 Illumina HiSeq 2000 (Homo sapiens)
GSE165132 RNA-seq 56 NextSeq 550 (Homo sapiens)
C
  GSE100266 		ATAC-seq;Chip-seq;RNA-seq 32 Illumina HiSeq 2500 (Homo sapiens)
C
  GSE165703 		ATAC-seq 82 Illumina HiSeq 4000 (Homo sapiens)
GSE246082 RNA-seq 6 Illumina HiSeq 4000 (Homo sapiens)


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE221688 - SPECC1L-ADORA2A peak across samples

Peak Plot

> Dataset: GSE165705 - SPECC1L-ADORA2A peak across samples

Peak Plot

> Dataset: GSE30738 - SPECC1L-ADORA2A peak across samples

Peak Plot

> Dataset: GSE144329 - SPECC1L-ADORA2A peak across samples

Peak Plot

> Dataset: GSE220859 - SPECC1L-ADORA2A peak across samples

Peak Plot

> Dataset: GSE211651 - SPECC1L-ADORA2A peak across samples

Peak Plot

> Dataset: GSE100376 - SPECC1L-ADORA2A peak across samples

Peak Plot

> Dataset: GSE100266 - SPECC1L-ADORA2A peak across samples

Peak Plot

> Dataset: GSE165703 - SPECC1L-ADORA2A peak across samples

Peak Plot