Virus Dataset Detail

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Dataset Information
Accession GSE105884
Status 2019/1/23
Title Transcriptomic profile of circulating CD8 T cells in donors with ZIKV infection
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary The pandemic rise of Zika virus (ZIKV) has recently commanded the attention of the general public and medical research community alike . The characterization of exact molecular components of immune response associated may help design more effective therapeutic interventions. In this study, we aimed to characterize the immune signature of ZK-specific CD8 T cells after stimulation with ZK specific peptides comparing it with a generic stimulation with anti-CD3/CD28. Transcriptomic profiling using RNA sequencing was performed on CD8 T cells producing IFNg in comparison with non IFNg producing cells isolated from individuals with Zika infections from endemic areas of Puerto Rico and US travellers.
Samples
GSM ID Sample info Characteristics Description
GSM2828566 2692_CD8_unstimulated individual:subject 2692; stimulation:IFNgneg; cell type:CD8 T cells; cell subset:CD3+CD8+ T cells -
GSM2828567 3027_CD8_unstimulated individual:subject 3027; stimulation:IFNgneg; cell type:CD8 T cells; cell subset:CD3+CD8+ T cells -
GSM2828568 3028_CD8_unstimulated individual:subject 3028; stimulation:IFNgneg; cell type:CD8 T cells; cell subset:CD3+CD8+ T cells -
GSM2828569 3031_CD8_unstimulated individual:subject 3031; stimulation:IFNgneg; cell type:CD8 T cells; cell subset:CD3+CD8+ T cells -
GSM2828570 3037_CD8_unstimulated individual:subject 3037; stimulation:IFNgneg; cell type:CD8 T cells; cell subset:CD3+CD8+ T cells -
GSM2828571 3038_CD8_unstimulated individual:subject 3038; stimulation:IFNgneg; cell type:CD8 T cells; cell subset:CD3+CD8+ T cells -
GSM2828572 3039_CD8_unstimulated individual:subject 3039; stimulation:IFNgneg; cell type:CD8 T cells; cell subset:CD3+CD8+ T cells -
GSM2828573 3043_CD8_unstimulated individual:subject 3043; stimulation:IFNgneg; cell type:CD8 T cells; cell subset:CD3+CD8+ T cells -
GSM2828574 3045_CD8_unstimulated individual:subject 3045; stimulation:IFNgneg; cell type:CD8 T cells; cell subset:CD3+CD8+ T cells -
GSM2828575 3047_CD8_unstimulated individual:subject 3047; stimulation:IFNgneg; cell type:CD8 T cells; cell subset:CD3+CD8+ T cells -
GSM2828576 3052_CD8_unstimulated individual:subject 3052; stimulation:IFNgneg; cell type:CD8 T cells; cell subset:CD3+CD8+ T cells -
GSM2828577 2653_CD8_unstimulated individual:subject 2653; stimulation:IFNgneg; cell type:CD8 T cells; cell subset:CD3+CD8+ T cells -
GSM2828578 2894_CD8_unstimulated individual:subject 2894; stimulation:IFNgneg; cell type:CD8 T cells; cell subset:CD3+CD8+ T cells -
GSM2828580 3030_CD8_unstimulated individual:subject 3030; stimulation:IFNgneg; cell type:CD8 T cells; cell subset:CD3+CD8+ T cells -
GSM2828581 3053_CD8_unstimulated individual:subject 3053; stimulation:IFNgneg; cell type:CD8 T cells; cell subset:CD3+CD8+ T cells -
GSM2828582 3054_CD8_unstimulated individual:subject 3054; stimulation:IFNgneg; cell type:CD8 T cells; cell subset:CD3+CD8+ T cells -
GSM2828583 2692_CD8_ZK_IFNgneg individual:subject 2692; stimulation:ZK_IFNgneg; cell type:CD8 T cells; cell subset:CD3+CD8+ T cells -
GSM2828584 3027_CD8_ZK_IFNgneg individual:subject 3027; stimulation:ZK_IFNgneg; cell type:CD8 T cells; cell subset:CD3+CD8+ T cells -
GSM2828585 3028_CD8_ZK_IFNgneg individual:subject 3028; stimulation:ZK_IFNgneg; cell type:CD8 T cells; cell subset:CD3+CD8+ T cells -
GSM2828586 3031_CD8_ZK_IFNgneg individual:subject 3031; stimulation:ZK_IFNgneg; cell type:CD8 T cells; cell subset:CD3+CD8+ T cells -
GSM2828587 3037_CD8_ZK_IFNgneg individual:subject 3037; stimulation:ZK_IFNgneg; cell type:CD8 T cells; cell subset:CD3+CD8+ T cells -
GSM2828588 3038_CD8_ZK_IFNgneg individual:subject 3038; stimulation:ZK_IFNgneg; cell type:CD8 T cells; cell subset:CD3+CD8+ T cells -
GSM2828589 3039_CD8_ZK_IFNgneg individual:subject 3039; stimulation:ZK_IFNgneg; cell type:CD8 T cells; cell subset:CD3+CD8+ T cells -
GSM2828590 3043_CD8_ZK_IFNgneg individual:subject 3043; stimulation:ZK_IFNgneg; cell type:CD8 T cells; cell subset:CD3+CD8+ T cells -
GSM2828591 3045_CD8_ZK_IFNgneg individual:subject 3045; stimulation:ZK_IFNgneg; cell type:CD8 T cells; cell subset:CD3+CD8+ T cells -
GSM2828592 3047_CD8_ZK_IFNgneg individual:subject 3047; stimulation:ZK_IFNgneg; cell type:CD8 T cells; cell subset:CD3+CD8+ T cells -
GSM2828593 3052_CD8_ZK_IFNgneg individual:subject 3052; stimulation:ZK_IFNgneg; cell type:CD8 T cells; cell subset:CD3+CD8+ T cells -
GSM2828594 2653_CD8_ZK_IFNgneg individual:subject 2653; stimulation:ZK_IFNgneg; cell type:CD8 T cells; cell subset:CD3+CD8+ T cells -
GSM2828595 2894_CD8_ZK_IFNgneg individual:subject 2894; stimulation:ZK_IFNgneg; cell type:CD8 T cells; cell subset:CD3+CD8+ T cells -
GSM2828596 3030_CD8_ZK_IFNgneg individual:subject 3030; stimulation:ZK_IFNgneg; cell type:CD8 T cells; cell subset:CD3+CD8+ T cells -
GSM2828597 3053_CD8_ZK_IFNgneg individual:subject 3053; stimulation:ZK_IFNgneg; cell type:CD8 T cells; cell subset:CD3+CD8+ T cells -
GSM2828598 3054_CD8_ZK_IFNgneg individual:subject 3054; stimulation:ZK_IFNgneg; cell type:CD8 T cells; cell subset:CD3+CD8+ T cells -
GSM2828599 2692_CD8_ZK_IFNgpos individual:subject 2692; stimulation:ZK_IFNgpos; cell type:CD8 T cells; cell subset:CD3+CD8+IFNg+ T cells -
GSM2828600 3027_CD8_ZK_IFNgpos individual:subject 3027; stimulation:ZK_IFNgpos; cell type:CD8 T cells; cell subset:CD3+CD8+IFNg+ T cells -
GSM2828601 3028_CD8_ZK_IFNgpos individual:subject 3028; stimulation:ZK_IFNgpos; cell type:CD8 T cells; cell subset:CD3+CD8+IFNg+ T cells -
GSM2828602 3031_CD8_ZK_IFNgpos individual:subject 3031; stimulation:ZK_IFNgpos; cell type:CD8 T cells; cell subset:CD3+CD8+IFNg+ T cells -
GSM2828603 3037_CD8_ZK_IFNgpos individual:subject 3037; stimulation:ZK_IFNgpos; cell type:CD8 T cells; cell subset:CD3+CD8+IFNg+ T cells -
GSM2828604 3038_CD8_ZK_IFNgpos individual:subject 3038; stimulation:ZK_IFNgpos; cell type:CD8 T cells; cell subset:CD3+CD8+IFNg+ T cells -
GSM2828605 3043_CD8_ZK_IFNgpos individual:subject 3043; stimulation:ZK_IFNgpos; cell type:CD8 T cells; cell subset:CD3+CD8+IFNg+ T cells -
GSM2828606 3045_CD8_ZK_IFNgpos individual:subject 3045; stimulation:ZK_IFNgpos; cell type:CD8 T cells; cell subset:CD3+CD8+IFNg+ T cells -
GSM2828607 3047_CD8_ZK_IFNgpos individual:subject 3047; stimulation:ZK_IFNgpos; cell type:CD8 T cells; cell subset:CD3+CD8+IFNg+ T cells -
GSM2828608 3052_CD8_ZK_IFNgpos individual:subject 3052; stimulation:ZK_IFNgpos; cell type:CD8 T cells; cell subset:CD3+CD8+IFNg+ T cells -
GSM2828609 2653_CD8_ZK_IFNgpos individual:subject 2653; stimulation:ZK_IFNgpos; cell type:CD8 T cells; cell subset:CD3+CD8+IFNg+ T cells -
GSM2828610 2894_CD8_ZK_IFNgpos individual:subject 2894; stimulation:ZK_IFNgpos; cell type:CD8 T cells; cell subset:CD3+CD8+IFNg+ T cells -
GSM2828611 3054_CD8_ZK_IFNgpos individual:subject 3054; stimulation:ZK_IFNgpos; cell type:CD8 T cells; cell subset:CD3+CD8+IFNg+ T cells -
GSM2828612 2692_CD8_antiCD3_IFNgpos individual:subject 2692; stimulation:antiCD3_IFNgpos; cell type:CD8 T cells; cell subset:CD3+CD8+ T cells -
GSM2828613 3027_CD8_antiCD3_IFNgpos individual:subject 3027; stimulation:antiCD3_IFNgpos; cell type:CD8 T cells; cell subset:CD3+CD8+ T cells -
GSM2828614 3028_CD8_antiCD3_IFNgpos individual:subject 3028; stimulation:antiCD3_IFNgpos; cell type:CD8 T cells; cell subset:CD3+CD8+ T cells -
GSM2828615 3031_CD8_antiCD3_IFNgpos individual:subject 3031; stimulation:antiCD3_IFNgpos; cell type:CD8 T cells; cell subset:CD3+CD8+ T cells -
GSM2828616 3038_CD8_antiCD3_IFNgpos individual:subject 3038; stimulation:antiCD3_IFNgpos; cell type:CD8 T cells; cell subset:CD3+CD8+ T cells -
GSM2828617 3039_CD8_antiCD3_IFNgpos individual:subject 3039; stimulation:antiCD3_IFNgpos; cell type:CD8 T cells; cell subset:CD3+CD8+ T cells -
GSM2828618 3043_CD8_antiCD3_IFNgpos individual:subject 3043; stimulation:antiCD3_IFNgpos; cell type:CD8 T cells; cell subset:CD3+CD8+ T cells -
GSM2828619 3045_CD8_antiCD3_IFNgpos individual:subject 3045; stimulation:antiCD3_IFNgpos; cell type:CD8 T cells; cell subset:CD3+CD8+ T cells -
GSM2828620 3047_CD8_antiCD3_IFNgpos individual:subject 3047; stimulation:antiCD3_IFNgpos; cell type:CD8 T cells; cell subset:CD3+CD8+ T cells -
GSM2828621 3052_CD8_antiCD3_IFNgpos individual:subject 3052; stimulation:antiCD3_IFNgpos; cell type:CD8 T cells; cell subset:CD3+CD8+ T cells -
GSM2828622 2653_CD8_antiCD3_IFNgpos individual:subject 2653; stimulation:antiCD3_IFNgpos; cell type:CD8 T cells; cell subset:CD3+CD8+ T cells -
GSM2828623 2894_CD8_antiCD3_IFNgpos individual:subject 2894; stimulation:antiCD3_IFNgpos; cell type:CD8 T cells; cell subset:CD3+CD8+ T cells -
GSM2828624 3030_CD8_antiCD3_IFNgpos individual:subject 3030; stimulation:antiCD3_IFNgpos; cell type:CD8 T cells; cell subset:CD3+CD8+ T cells -
GSM2828625 3053_CD8_antiCD3_IFNgpos individual:subject 3053; stimulation:antiCD3_IFNgpos; cell type:CD8 T cells; cell subset:CD3+CD8+ T cells -
GSM2828626 3054_CD8_antiCD3_IFNgpos individual:subject 3054; stimulation:antiCD3_IFNgpos; cell type:CD8 T cells; cell subset:CD3+CD8+ T cells -
Platform GPL16791  : Illumina HiSeq 2500 (Homo sapiens)
Literature 30413672  
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xCell Plot
* p<0.05 ** p<0.01