Accession	GSE110511
Status	2018/12/3
Title	Leo1 occupancy in presence of dengue virus NS5
Organism	Homo sapiens
Experiment type	Genome binding/occupancy profiling by high throughput sequencing
Summary	We use ChIP-seq on PAF1C member Leo1 to determine how PAF1C occupancy at interferon stimulated genes is impacted by dengue virus NS5 protein.
Samples	GSM ID Sample info Characteristics Description GSM2995067 GFP Mock Input, Rep1 protein expressed:GFP; treatment:mock Input control for GFP mock treatment GSM2995068 GFP Mock ChIP, Rep1 protein expressed:GFP; treatment:mock Leo1 ChIP for GFP mock treatment GSM2995069 GFP Mock Input, Rep2 protein expressed:GFP; treatment:mock Input control for GFP mock treatment GSM2995070 GFP Mock ChIP, Rep2 protein expressed:GFP; treatment:mock Leo1 ChIP for GFP mock treatment GSM2995071 GFP Mock Input, Rep3 protein expressed:GFP; treatment:mock Input control for GFP mock treatment GSM2995072 GFP Mock ChIP, Rep3 protein expressed:GFP; treatment:mock Leo1 ChIP for GFP mock treatment GSM2995073 GFP IFN Input, Rep1 protein expressed:GFP; treatment:interferon beta Input control for GFP interferon treatment GSM2995074 GFP IFN ChIP, Rep1 protein expressed:GFP; treatment:interferon beta Leo1 ChIP for GFP interferon treatment GSM2995075 GFP IFN Input, Rep2 protein expressed:GFP; treatment:interferon beta Input control for GFP interferon treatment GSM2995076 GFP IFN ChIP, Rep2 protein expressed:GFP; treatment:interferon beta Leo1 ChIP for GFP interferon treatment GSM2995077 GFP IFN Input, Rep3 protein expressed:GFP; treatment:interferon beta Input control for GFP interferon treatment GSM2995078 GFP IFN ChIP, Rep3 protein expressed:GFP; treatment:interferon beta Leo1 ChIP for GFP interferon treatment GSM2995079 NS5 Mock Input, Rep1 protein expressed:NS5; treatment:mock Input control for NS5 mock treatment GSM2995080 NS5 Mock ChIP, Rep1 protein expressed:NS5; treatment:mock Leo1 ChIP for NS5 mock treatment GSM2995081 NS5 Mock Input, Rep2 protein expressed:NS5; treatment:mock Input control for NS5 mock treatment GSM2995082 NS5 Mock ChIP, Rep2 protein expressed:NS5; treatment:mock Leo1 ChIP for NS5 mock treatment GSM2995083 NS5 Mock Input, Rep3 protein expressed:NS5; treatment:mock Input control for NS5 mock treatment GSM2995084 NS5 Mock ChIP, Rep3 protein expressed:NS5; treatment:mock Leo1 ChIP for NS5 mock treatment GSM2995085 NS5 IFN Input, Rep1 protein expressed:NS5; treatment:interferon beta Input control for NS5 interferon treatment GSM2995086 NS5 IFN ChIP, Rep1 protein expressed:NS5; treatment:interferon beta Leo1 ChIP for NS5 interferon treatment GSM2995087 NS5 IFN Input, Rep2 protein expressed:NS5; treatment:interferon beta Input control for NS5 interferon treatment GSM2995088 NS5 IFN ChIP, Rep2 protein expressed:NS5; treatment:interferon beta Leo1 ChIP for NS5 interferon treatment GSM2995089 NS5 IFN Input, Rep3 protein expressed:NS5; treatment:interferon beta Input control for NS5 interferon treatment GSM2995090 NS5 IFN ChIP, Rep3 protein expressed:NS5; treatment:interferon beta Leo1 ChIP for NS5 interferon treatment
Platform	GPL20301  : Illumina HiSeq 4000 (Homo sapiens)
Literature
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