Virus Dataset Detail

> Detail information for each sample

Dataset Information
Accession GSE113702
Status 2018/12/14
Title H3K27ac profiling of human tracheobronchial epithelial cells during infection with H1N1, H3N2, and H5N1 influenza virus [ChIP-seq]
Organism Homo sapiens
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary Human tracheobronchial epithelial (HTBE) cells are considered to serve as a good correlate of influenza virus infection in the human respiratory tract. ChIP-Seq analysis was used to profile histone acetylation (H3K27ac) in HTBE cells at multiple time points in response to infection with influenza A/California/04/09 (H1N1), A/Wyoming/03/03 (H3N2), and A/Vietnam/1203/04 (H5N1) HALo virus. The Influenza A/Vietnam/1203/04 (H5N1) HALo mutant virus is an attenuated H5N1 virus generated from wild-type Influenza A/Vietnam/1203/04 (H5N1) virus as described in Steel, J., et al. J Virol. 2009 Feb; 83(4):1742-53.
Samples
GSM ID Sample info Characteristics Description
GSM3112331 HTBE_H1N1_mock_Input_1 cell type:Human tracheobronchial epithelial (HTBE) cells; infected with:H1N1 influenza virus; time point:uninfected (mock control); chip antibody:none (input); biological replicate:1 -
GSM3112364 HTBE_H5N1_mock_H3K27ac_2 cell type:Human tracheobronchial epithelial (HTBE) cells; infected with:H5N1 influenza virus; time point:uninfected (mock control); chip antibody:H3K27ac; biological replicate:2 -
GSM3112332 HTBE_H3N2_03h_H3K27ac_1 cell type:Human tracheobronchial epithelial (HTBE) cells; infected with:H3N2 influenza virus; time point:03h post-infection; chip antibody:H3K27ac; biological replicate:1 -
GSM3112365 HTBE_H5N1_mock_IgG_1 cell type:Human tracheobronchial epithelial (HTBE) cells; infected with:H5N1 influenza virus; time point:uninfected (mock control); chip antibody:IgG; biological replicate:1 -
GSM3112333 HTBE_H3N2_03h_H3K27ac_2 cell type:Human tracheobronchial epithelial (HTBE) cells; infected with:H3N2 influenza virus; time point:03h post-infection; chip antibody:H3K27ac; biological replicate:2 -
GSM3112334 HTBE_H3N2_03h_Input_1 cell type:Human tracheobronchial epithelial (HTBE) cells; infected with:H3N2 influenza virus; time point:03h post-infection; chip antibody:none (input); biological replicate:1 -
GSM3112366 HTBE_H5N1_mock_IgG_2 cell type:Human tracheobronchial epithelial (HTBE) cells; infected with:H5N1 influenza virus; time point:uninfected (mock control); chip antibody:IgG; biological replicate:2 -
GSM3112335 HTBE_H3N2_06h_H3K27ac_1 cell type:Human tracheobronchial epithelial (HTBE) cells; infected with:H3N2 influenza virus; time point:06h post-infection; chip antibody:H3K27ac; biological replicate:1 -
GSM3112336 HTBE_H3N2_06h_H3K27ac_2 cell type:Human tracheobronchial epithelial (HTBE) cells; infected with:H3N2 influenza virus; time point:06h post-infection; chip antibody:H3K27ac; biological replicate:2 -
GSM3112367 HTBE_H5N1_mock_Input_1 cell type:Human tracheobronchial epithelial (HTBE) cells; infected with:H5N1 influenza virus; time point:uninfected (mock control); chip antibody:none (input); biological replicate:1 -
GSM3112337 HTBE_H3N2_06h_Input_1 cell type:Human tracheobronchial epithelial (HTBE) cells; infected with:H3N2 influenza virus; time point:06h post-infection; chip antibody:none (input); biological replicate:1 -
GSM3112338 HTBE_H3N2_12h_H3K27ac_1 cell type:Human tracheobronchial epithelial (HTBE) cells; infected with:H3N2 influenza virus; time point:12h post-infection; chip antibody:H3K27ac; biological replicate:1 -
GSM3112368 HTBE_H5N1_mock_Input_2 cell type:Human tracheobronchial epithelial (HTBE) cells; infected with:H5N1 influenza virus; time point:uninfected (mock control); chip antibody:none (input); biological replicate:2 -
GSM3112339 HTBE_H3N2_12h_H3K27ac_2 cell type:Human tracheobronchial epithelial (HTBE) cells; infected with:H3N2 influenza virus; time point:12h post-infection; chip antibody:H3K27ac; biological replicate:2 -
GSM3112340 HTBE_H3N2_12h_Input_1 cell type:Human tracheobronchial epithelial (HTBE) cells; infected with:H3N2 influenza virus; time point:12h post-infection; chip antibody:none (input); biological replicate:1 -
GSM3112341 HTBE_H3N2_18h_H3K27ac_1 cell type:Human tracheobronchial epithelial (HTBE) cells; infected with:H3N2 influenza virus; time point:18h post-infection; chip antibody:H3K27ac; biological replicate:1 -
GSM3112342 HTBE_H3N2_18h_H3K27ac_2 cell type:Human tracheobronchial epithelial (HTBE) cells; infected with:H3N2 influenza virus; time point:18h post-infection; chip antibody:H3K27ac; biological replicate:2 -
GSM3112343 HTBE_H3N2_18h_Input_1 cell type:Human tracheobronchial epithelial (HTBE) cells; infected with:H3N2 influenza virus; time point:18h post-infection; chip antibody:none (input); biological replicate:1 -
GSM3112344 HTBE_H3N2_mock_H3K27ac_1 cell type:Human tracheobronchial epithelial (HTBE) cells; infected with:H3N2 influenza virus; time point:uninfected (mock control); chip antibody:H3K27ac; biological replicate:1 -
GSM3112345 HTBE_H3N2_mock_H3K27ac_2 cell type:Human tracheobronchial epithelial (HTBE) cells; infected with:H3N2 influenza virus; time point:uninfected (mock control); chip antibody:H3K27ac; biological replicate:2 -
GSM3112346 HTBE_H3N2_mock_Input_1 cell type:Human tracheobronchial epithelial (HTBE) cells; infected with:H3N2 influenza virus; time point:uninfected (mock control); chip antibody:none (input); biological replicate:1 -
GSM3112347 HTBE_H5N1_03h_H3K27ac_1 cell type:Human tracheobronchial epithelial (HTBE) cells; infected with:H5N1 influenza virus; time point:03h post-infection; chip antibody:H3K27ac; biological replicate:1 -
GSM3112348 HTBE_H5N1_03h_H3K27ac_2 cell type:Human tracheobronchial epithelial (HTBE) cells; infected with:H5N1 influenza virus; time point:03h post-infection; chip antibody:H3K27ac; biological replicate:2 -
GSM3112349 HTBE_H5N1_03h_Input_1 cell type:Human tracheobronchial epithelial (HTBE) cells; infected with:H5N1 influenza virus; time point:03h post-infection; chip antibody:none (input); biological replicate:1 -
GSM3112350 HTBE_H5N1_03h_Input_2 cell type:Human tracheobronchial epithelial (HTBE) cells; infected with:H5N1 influenza virus; time point:03h post-infection; chip antibody:none (input); biological replicate:2 -
GSM3112351 HTBE_H5N1_06h_H3K27ac_1 cell type:Human tracheobronchial epithelial (HTBE) cells; infected with:H5N1 influenza virus; time point:06h post-infection; chip antibody:H3K27ac; biological replicate:1 -
GSM3112352 HTBE_H5N1_06h_H3K27ac_2 cell type:Human tracheobronchial epithelial (HTBE) cells; infected with:H5N1 influenza virus; time point:06h post-infection; chip antibody:H3K27ac; biological replicate:2 -
GSM3112353 HTBE_H5N1_06h_Input_1 cell type:Human tracheobronchial epithelial (HTBE) cells; infected with:H5N1 influenza virus; time point:06h post-infection; chip antibody:none (input); biological replicate:1 -
GSM3112354 HTBE_H5N1_06h_Input_2 cell type:Human tracheobronchial epithelial (HTBE) cells; infected with:H5N1 influenza virus; time point:06h post-infection; chip antibody:none (input); biological replicate:2 -
GSM3112355 HTBE_H5N1_12h_H3K27ac_1 cell type:Human tracheobronchial epithelial (HTBE) cells; infected with:H5N1 influenza virus; time point:12h post-infection; chip antibody:H3K27ac; biological replicate:1 -
GSM3112317 HTBE_H1N1_06h_H3K27ac_1 cell type:Human tracheobronchial epithelial (HTBE) cells; infected with:H1N1 influenza virus; time point:06h post-infection; chip antibody:H3K27ac; biological replicate:1 -
GSM3112318 HTBE_H1N1_06h_H3K27ac_2 cell type:Human tracheobronchial epithelial (HTBE) cells; infected with:H1N1 influenza virus; time point:06h post-infection; chip antibody:H3K27ac; biological replicate:2 -
GSM3112356 HTBE_H5N1_12h_H3K27ac_2 cell type:Human tracheobronchial epithelial (HTBE) cells; infected with:H5N1 influenza virus; time point:12h post-infection; chip antibody:H3K27ac; biological replicate:2 -
GSM3112319 HTBE_H1N1_06h_Input_1 cell type:Human tracheobronchial epithelial (HTBE) cells; infected with:H1N1 influenza virus; time point:06h post-infection; chip antibody:none (input); biological replicate:1 -
GSM3112320 HTBE_H1N1_12h_H3K27ac_1 cell type:Human tracheobronchial epithelial (HTBE) cells; infected with:H1N1 influenza virus; time point:12h post-infection; chip antibody:H3K27ac; biological replicate:1 -
GSM3112357 HTBE_H5N1_12h_Input_1 cell type:Human tracheobronchial epithelial (HTBE) cells; infected with:H5N1 influenza virus; time point:12h post-infection; chip antibody:none (input); biological replicate:1 -
GSM3112321 HTBE_H1N1_12h_H3K27ac_2 cell type:Human tracheobronchial epithelial (HTBE) cells; infected with:H1N1 influenza virus; time point:12h post-infection; chip antibody:H3K27ac; biological replicate:2 -
GSM3112322 HTBE_H1N1_12h_Input_1 cell type:Human tracheobronchial epithelial (HTBE) cells; infected with:H1N1 influenza virus; time point:12h post-infection; chip antibody:none (input); biological replicate:1 -
GSM3112358 HTBE_H5N1_12h_Input_2 cell type:Human tracheobronchial epithelial (HTBE) cells; infected with:H5N1 influenza virus; time point:12h post-infection; chip antibody:none (input); biological replicate:2 -
GSM3112323 HTBE_H1N1_18h_H3K27ac_1 cell type:Human tracheobronchial epithelial (HTBE) cells; infected with:H1N1 influenza virus; time point:18h post-infection; chip antibody:H3K27ac; biological replicate:1 -
GSM3112359 HTBE_H5N1_18h_H3K27ac_1 cell type:Human tracheobronchial epithelial (HTBE) cells; infected with:H5N1 influenza virus; time point:18h post-infection; chip antibody:H3K27ac; biological replicate:1 -
GSM3112324 HTBE_H1N1_18h_H3K27ac_2 cell type:Human tracheobronchial epithelial (HTBE) cells; infected with:H1N1 influenza virus; time point:18h post-infection; chip antibody:H3K27ac; biological replicate:2 -
GSM3112325 HTBE_H1N1_18h_Input_1 cell type:Human tracheobronchial epithelial (HTBE) cells; infected with:H1N1 influenza virus; time point:18h post-infection; chip antibody:none (input); biological replicate:1 -
GSM3112360 HTBE_H5N1_18h_H3K27ac_2 cell type:Human tracheobronchial epithelial (HTBE) cells; infected with:H5N1 influenza virus; time point:18h post-infection; chip antibody:H3K27ac; biological replicate:2 -
GSM3112326 HTBE_H1N1_24h_H3K27ac_1 cell type:Human tracheobronchial epithelial (HTBE) cells; infected with:H1N1 influenza virus; time point:24h post-infection; chip antibody:H3K27ac; biological replicate:1 -
GSM3112361 HTBE_H5N1_18h_Input_1 cell type:Human tracheobronchial epithelial (HTBE) cells; infected with:H5N1 influenza virus; time point:18h post-infection; chip antibody:none (input); biological replicate:1 -
GSM3112327 HTBE_H1N1_24h_H3K27ac_2 cell type:Human tracheobronchial epithelial (HTBE) cells; infected with:H1N1 influenza virus; time point:24h post-infection; chip antibody:H3K27ac; biological replicate:2 -
GSM3112362 HTBE_H5N1_18h_Input_2 cell type:Human tracheobronchial epithelial (HTBE) cells; infected with:H5N1 influenza virus; time point:18h post-infection; chip antibody:none (input); biological replicate:2 -
GSM3112328 HTBE_H1N1_24h_Input_1 cell type:Human tracheobronchial epithelial (HTBE) cells; infected with:H1N1 influenza virus; time point:24h post-infection; chip antibody:none (input); biological replicate:1 -
GSM3112329 HTBE_H1N1_mock_H3K27ac_1 cell type:Human tracheobronchial epithelial (HTBE) cells; infected with:H1N1 influenza virus; time point:uninfected (mock control); chip antibody:H3K27ac; biological replicate:1 -
GSM3112363 HTBE_H5N1_mock_H3K27ac_1 cell type:Human tracheobronchial epithelial (HTBE) cells; infected with:H5N1 influenza virus; time point:uninfected (mock control); chip antibody:H3K27ac; biological replicate:1 -
GSM3112330 HTBE_H1N1_mock_H3K27ac_2 cell type:Human tracheobronchial epithelial (HTBE) cells; infected with:H1N1 influenza virus; time point:uninfected (mock control); chip antibody:H3K27ac; biological replicate:2 -
Platform GPL18573  GPL20301  : Illumina NextSeq 500 (Homo sapiens);Illumina HiSeq 4000 (Homo sapiens)
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