Virus Dataset Detail

> Detail information for each sample

Dataset Information
Accession GSE136217
Status 2020/10/1
Title Dual-Sequencing of dendritic cells infected with cytomegalovirus
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary Dendritic cells were infected with human cytomegalovirus (CMV) for 4, 8 or 12 hours. Single-cultures of dendritic cells serve as controls. RNA was isolated and processed for next generation sequencing.
Samples
GSM ID Sample info Characteristics Description
GSM4042696 DC-alone-4hour cell type:dendritic cells; strain or line:DC; sampling time point (hours):4; temperature:37 degrees C; atmosphere:5% CO2; media:CellGro GMP serum-free DC medium; parameter:260/280: 2.03; parameter:rin/rna integrity number: 9.6; parameter:concentration (ng/ul): 50; parameter:volume (microliter): 60 1-DC-alone-4h.fq.gz
GSM4042697 DC-plus-CMV-4hour cell type:dendritic cells; strain or line:DC; Human herpesvirus 5 strain TB40/E clone TB40-BAC4; sampling time point (hours):4; temperature:37 degrees C; atmosphere:5% CO2; viral strain:Human herpesvirus 5 strain TB40/E clone TB40-BAC4; media:CellGro GMP serum-free DC medium; parameter:260/280: 2.03; parameter:rin/rna integrity number: 9.4; parameter:concentration (ng/ul): 64; parameter:volume (microliter): 60 2-DC-CMV-4h.fq.gz
GSM4042698 DC-alone-8hour cell type:dendritic cells; strain or line:DC; sampling time point (hours):8; temperature:37 degrees C; atmosphere:5% CO2; media:CellGro GMP serum-free DC medium; parameter:260/280: 2.01; parameter:rin/rna integrity number: 9.5; parameter:concentration (ng/ul): 48; parameter:volume (microliter): 60 3-DC-alone-8h.fq.gz
GSM4042699 DC-plus-CMV-8hour cell type:dendritic cells; strain or line:DC; Human herpesvirus 5 strain TB40/E clone TB40-BAC4; sampling time point (hours):8; temperature:37 degrees C; atmosphere:5% CO2; viral strain:Human herpesvirus 5 strain TB40/E clone TB40-BAC4; media:CellGro GMP serum-free DC medium; parameter:260/280: 2.01; parameter:rin/rna integrity number: 9.2; parameter:concentration (ng/ul): 52; parameter:volume (microliter): 60 4-DC-CMV-8h.fq.gz
GSM4042700 DC-alone-12hour cell type:dendritic cells; strain or line:DC; sampling time point (hours):12; temperature:37 degrees C; atmosphere:5% CO2; media:CellGro GMP serum-free DC medium; parameter:260/280: 1.99; parameter:rin/rna integrity number: 9.3; parameter:concentration (ng/ul): 32; parameter:volume (microliter): 60 5-DC-alone-12h.fq.gz
GSM4042701 DC-plus-CMV-12hour cell type:dendritic cells; strain or line:DC; Human herpesvirus 5 strain TB40/E clone TB40-BAC4; sampling time point (hours):12; temperature:37 degrees C; atmosphere:5% CO2; viral strain:Human herpesvirus 5 strain TB40/E clone TB40-BAC4; media:CellGro GMP serum-free DC medium; parameter:260/280: 2.01; parameter:rin/rna integrity number: 9.6; parameter:concentration (ng/ul): 74; parameter:volume (microliter): 30 6-DC-CMV-12h.fq.gz
GSM4042702 DC-plus-CMV-12hour-polyA cell type:dendritic cells; strain or line:DC; Human herpesvirus 5 strain TB40/E clone TB40-BAC4; sampling time point (hours):12; temperature:37 degrees C; atmosphere:5% CO2; viral strain:Human herpesvirus 5 strain TB40/E clone TB40-BAC4; media:CellGro GMP serum-free DC medium; parameter:260/280: 2.01; parameter:rin/rna integrity number: 9.6; parameter:concentration (ng/ul): 74; parameter:volume (microliter): 30 6-DC-CMV-12h-pA.fq.gz
Platform GPL18573  GPL24958  : Illumina NextSeq 500 (Homo sapiens);Illumina NextSeq 500 (Homo sapiens; Human betaherpesvirus 5)
Literature 33207195  
Download Download xCell Data  Download Expression Analysis Data  
xCell Plot
* p<0.05 ** p<0.01