Virus Dataset Detail

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Dataset Information
Accession GSE164843
Status 2021/3/5
Title Comparison of HCMV nascent and steady state transcriptomes expresssed in the Kasumi-3 latency model at early times post-infection
Organism Homo sapiens;Human betaherpesvirus 5
Experiment type Expression profiling by high throughput sequencing
Summary Purpose: to compare newly transcribed and steady-state HCMV RNAs expressed in Kasumi-3 cells at 24 hr post-infection
Samples
GSM ID Sample info Characteristics Description
GSM5020876 Nascent_RNA_Infected_K3_Rep1 treatment: HCMV infected, 24 hr, EU-labeled, biotinylated RNA purified;rna type: nascent RNA;cell line: Kasumi-3 RNA-seq
GSM5020877 Nascent_RNA_Infected_K3_Rep2 treatment: HCMV infected, 24 hr, EU-labeled, biotinylated RNA purified;rna type: nascent RNA;cell line: Kasumi-3 RNA-seq
GSM5020878 Nascent_RNA_Infected_K3_Rep3 treatment: HCMV infected, 24 hr, EU-labeled, biotinylated RNA purified;rna type: nascent RNA;cell line: Kasumi-3 RNA-seq
GSM5020879 Nascent_RNA_Uninfected_K3_Rep1 treatment: mock infected, 24 hr, EU-labeled, biotinylated RNA purified;rna type: nascent RNA;cell line: Kasumi-3 RNA-seq
GSM5020880 Nascent_RNA_Uninfected_K3_Rep2 treatment: mock infected, 24 hr, EU-labeled, biotinylated RNA purified;rna type: nascent RNA;cell line: Kasumi-3 RNA-seq
GSM5020881 Total_RNA_Infected_K3_Rep1 treatment: HCMV infected, 24 hr, EU-labeled total RNA;rna type: steady state RNA;cell line: Kasumi-3 RNA-seq
GSM5020882 Total_RNA_Infected_K3_Rep2 treatment: HCMV infected, 24 hr, EU-labeled total RNA;rna type: steady state RNA;cell line: Kasumi-3 RNA-seq
GSM5020883 Total_RNA_Infected_K3_Rep3 treatment: HCMV infected, 24 hr, EU-labeled total RNA;rna type: steady state RNA;cell line: Kasumi-3 RNA-seq
GSM5020884 Total_RNA_Uninfected_K3_Rep1 treatment: mock-infected, 24 hr, EU-labeled total RNA;rna type: steady state RNA;cell line: Kasumi-3 RNA-seq
GSM5020885 Total_RNA_Uninfected_K3_Rep2 treatment: mock-infected, 24 hr, EU-labeled total RNA;rna type: steady state RNA;cell line: Kasumi-3 RNA-seq
Platform GPL18573  GPL24958  : Illumina NextSeq 500 (Homo sapiens);Illumina NextSeq 500 (Homo sapiens; Human betaherpesvirus 5)
Literature 33731453  
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xCell Plot
* p<0.05 ** p<0.01