Virus Dataset Detail

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Dataset Information
Accession GSE166253
Status 2021/2/6
Title Transcriptomic characteristics and impaired immune function of patients who retest positive for SARS-CoV-2 RNA
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary The coronavirus disease 2019 (COVID-19), caused by severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), has gradually become a global public health crisis. Some patients who have recovered from COVID-19 subsequently tested positive again for SARS-CoV-2 after discharge (retesting-positive, RTP). However, the underlying mechanism is unknown. Here, 10 RTP patients, 6 convalescent patients, and 10 healthy controls were enrolled for analysis of the immunological characteristics of their peripheral blood mononuclear cells (PBMCs). We sought to comprehensively characterize the transcriptional changes in the three groups by transcriptome sequencing. Our findings provide insights into the impaired immune function and pathogenesis of RTP occurrence in COVID-19, which may contribute to the development of immunotherapy for RTP patients.
Samples
GSM ID Sample info Characteristics Description
GSM5066829 PBMCs, RTP 2 Sex:Male; age:68; tissue:Blood; cell type:PBMC; disease state:retesting-positive (RTP); previous severity:moderate ExpressionProfile.txt, column P-10A
GSM5066830 PBMCs, RTP 3 Sex:Female; age:76; tissue:Blood; cell type:PBMC; disease state:retesting-positive (RTP); previous severity:moderate ExpressionProfile.txt, column P-11A
GSM5066831 PBMCs, RTP 4 Sex:Female; age:70; tissue:Blood; cell type:PBMC; disease state:retesting-positive (RTP); previous severity:moderate ExpressionProfile.txt, column P-15A
GSM5066832 PBMCs, RTP 5 Sex:Male; age:78; tissue:Blood; cell type:PBMC; disease state:retesting-positive (RTP); previous severity:moderate ExpressionProfile.txt, column P-17A
GSM5066833 PBMCs, RTP 6 Sex:Male; age:64; tissue:Blood; cell type:PBMC; disease state:retesting-positive (RTP); previous severity:moderate ExpressionProfile.txt, column P-19A
GSM5066834 PBMCs, RTP 7 Sex:Male; age:68; tissue:Blood; cell type:PBMC; disease state:retesting-positive (RTP); previous severity:moderate ExpressionProfile.txt, column P-20A
GSM5066835 PBMCs, RTP 8 Sex:Female; age:46; tissue:Blood; cell type:PBMC; disease state:retesting-positive (RTP); previous severity:moderate ExpressionProfile.txt, column P-25A
GSM5066836 PBMCs, RTP 9 Sex:Female; age:65; tissue:Blood; cell type:PBMC; disease state:retesting-positive (RTP); previous severity:moderate ExpressionProfile.txt, column P-29A
GSM5066837 PBMCs, RTP 10 Sex:Female; age:63; tissue:Blood; cell type:PBMC; disease state:retesting-positive (RTP); previous severity:moderate ExpressionProfile.txt, column P-30A
GSM5066812 PBMCs, Healthy 1 Sex:Male; age:65; tissue:Blood; cell type:PBMC; disease state:healthy; previous severity:healthy ExpressionProfile.txt, column H10
GSM5066813 PBMCs, Healthy 2 Sex:Male; age:56; tissue:Blood; cell type:PBMC; disease state:healthy; previous severity:healthy ExpressionProfile.txt, column H11
GSM5066814 PBMCs, Healthy 3 Sex:Female; age:74; tissue:Blood; cell type:PBMC; disease state:healthy; previous severity:healthy ExpressionProfile.txt, column H12
GSM5066815 PBMCs, Healthy 4 Sex:Male; age:56; tissue:Blood; cell type:PBMC; disease state:healthy; previous severity:healthy ExpressionProfile.txt, column H13
GSM5066816 PBMCs, Healthy 5 Sex:Female; age:53; tissue:Blood; cell type:PBMC; disease state:healthy; previous severity:healthy ExpressionProfile.txt, column H4
GSM5066817 PBMCs, Healthy 6 Sex:Female; age:57; tissue:Blood; cell type:PBMC; disease state:healthy; previous severity:healthy ExpressionProfile.txt, column H5
GSM5066818 PBMCs, Healthy 7 Sex:Male; age:74; tissue:Blood; cell type:PBMC; disease state:healthy; previous severity:healthy ExpressionProfile.txt, column H6
GSM5066819 PBMCs, Healthy 8 Sex:Male; age:64; tissue:Blood; cell type:PBMC; disease state:healthy; previous severity:healthy ExpressionProfile.txt, column H7
GSM5066820 PBMCs, Healthy 9 Sex:Male; age:71; tissue:Blood; cell type:PBMC; disease state:healthy; previous severity:healthy ExpressionProfile.txt, column H8
GSM5066821 PBMCs, Healthy 10 Sex:Female; age:61; tissue:Blood; cell type:PBMC; disease state:healthy; previous severity:healthy ExpressionProfile.txt, column H9
GSM5066822 PBMCs, Convalescent 1 Sex:Male; age:72; tissue:Blood; cell type:PBMC; disease state:convalescent; previous severity:moderate ExpressionProfile.txt, column R1
GSM5066823 PBMCs, Convalescent 2 Sex:Male; age:71; tissue:Blood; cell type:PBMC; disease state:convalescent; previous severity:moderate ExpressionProfile.txt, column R2
GSM5066824 PBMCs, Convalescent 3 Sex:Female; age:66; tissue:Blood; cell type:PBMC; disease state:convalescent; previous severity:moderate ExpressionProfile.txt, column R3
GSM5066825 PBMCs, Convalescent 4 Sex:Female; age:56; tissue:Blood; cell type:PBMC; disease state:convalescent; previous severity:moderate ExpressionProfile.txt, column R4
GSM5066826 PBMCs, Convalescent 5 Sex:Female; age:72; tissue:Blood; cell type:PBMC; disease state:convalescent; previous severity:moderate ExpressionProfile.txt, column R5
GSM5066827 PBMCs, Convalescent 6 Sex:Male; age:58; tissue:Blood; cell type:PBMC; disease state:convalescent; previous severity:moderate ExpressionProfile.txt, column R6
GSM5066828 PBMCs, RTP 1 Sex:Male; age:65; tissue:Blood; cell type:PBMC; disease state:retesting-positive (RTP); previous severity:moderate ExpressionProfile.txt, column P-9A
Platform GPL20795  : HiSeq X Ten (Homo sapiens)
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* p<0.05 ** p<0.01