Virus Dataset Detail

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Dataset Information
Accession GSE181906
Status 2022/9/1
Title Competitive Endogenous RNA Landscape in Epstein-Barr Virus Associated Nasopharyngeal Carcinoma
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing;Non-coding RNA profiling by high throughput sequencing
Summary In this study, we investigated the role of microRNAs and circular RNAs in Nasopharyngeal Carcinoma (NPC) by constructing a circRNA-miRNA-mRNA co-expression network and performing differential expression analysis on mRNAs, miRNAs, and circRNAs. By comparing the expression profile of non-cancerous immortalized nasopharyngeal epithelial cell lines and NPC cell lines, we identified differentially expressed coding and non-coding RNAs. By leveraging coexpression and miRNA target prediction tools, we constructed a ceRNA network composed of mRNAs, miRNAs, and circRNAs.
Samples
GSM ID Sample info Characteristics Description
GSM5514143 miRNA-Seq s1029 tissue:fresh human nasopharyngeal carcinoma tumor; metastasized:TRUE s1029;Patient Sample 1
GSM5514144 miRNA-Seq s1017 tissue:fresh human nasopharyngeal carcinoma tumor; metastasized:TRUE s1017;Patient Sample 2
GSM5514145 miRNA-Seq s307 tissue:fresh human nasopharyngeal carcinoma tumor; metastasized:FALSE s307;Patient Sample 3
GSM5514146 miRNA-Seq s324 tissue:fresh human nasopharyngeal carcinoma tumor; metastasized:FALSE s324;Patient Sample 4
GSM5514147 circRNA-Seq C666 tissue:human nasopharyngeal carcinoma cell line; metastasized:n/a C666;Cell Line 1
GSM5514148 circRNA-Seq CNE tissue:human nasopharyngeal carcinoma cell line; metastasized:n/a CNE;Cell Line 2
GSM5514149 circRNA-Seq NP69 tissue:immortalized human nasopharyngeal epithelial cell line; metastasized:n/a NP69;Cell Line 3
GSM5514150 circRNA-Seq SUNE tissue:human nasopharyngeal carcinoma cell line; metastasized:n/a SUNE;Cell Line 4
GSM5514151 circRNA-Seq s1029 tissue:fresh human nasopharyngeal carcinoma tumor; metastasized:TRUE s1029;Patient Sample 1
GSM5514152 circRNA-Seq s1017 tissue:fresh human nasopharyngeal carcinoma tumor; metastasized:TRUE s1017;Patient Sample 2
GSM5514153 circRNA-Seq s307 tissue:fresh human nasopharyngeal carcinoma tumor; metastasized:FALSE s307;Patient Sample 3
GSM5514154 circRNA-Seq s324 tissue:fresh human nasopharyngeal carcinoma tumor; metastasized:FALSE s324;Patient Sample 4
GSM5514131 RNA-Seq C666 tissue:human nasopharyngeal carcinoma cell line; metastasized:n/a C666;Cell Line 1
GSM5514132 RNA-Seq CNE tissue:human nasopharyngeal carcinoma cell line; metastasized:n/a CNE;Cell Line 2
GSM5514133 RNA-Seq NP69 tissue:immortalized human nasopharyngeal epithelial cell line; metastasized:n/a NP69;Cell Line 3
GSM5514134 RNA-Seq SUNE tissue:human nasopharyngeal carcinoma cell line; metastasized:n/a SUNE;Cell Line 4
GSM5514135 RNA-Seq s1029 tissue:fresh human nasopharyngeal carcinoma tumor; metastasized:TRUE s1029;Patient Sample 1
GSM5514136 RNA-Seq s1017 tissue:fresh human nasopharyngeal carcinoma tumor; metastasized:TRUE s1017;Patient Sample 2
GSM5514137 RNA-Seq s307 tissue:fresh human nasopharyngeal carcinoma tumor; metastasized:FALSE s307;Patient Sample 3
GSM5514138 RNA-Seq s324 tissue:fresh human nasopharyngeal carcinoma tumor; metastasized:FALSE s324;Patient Sample 4
GSM5514139 miRNA-Seq C666 tissue:human nasopharyngeal carcinoma cell line; metastasized:n/a C666;Cell Line 1
GSM5514140 miRNA-Seq CNE tissue:human nasopharyngeal carcinoma cell line; metastasized:n/a CNE;Cell Line 2
GSM5514141 miRNA-Seq NP69 tissue:immortalized human nasopharyngeal epithelial cell line; metastasized:n/a NP69;Cell Line 3
GSM5514142 miRNA-Seq SUNE tissue:human nasopharyngeal carcinoma cell line; metastasized:n/a SUNE;Cell Line 4
Platform GPL24676  : Illumina NovaSeq 6000 (Homo sapiens)
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* p<0.05 ** p<0.01