Virus Dataset Detail

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Dataset Information
Accession GSE208281
Status 2023/12/21
Title RNA-seq data of nasopharyngeal carcinoma (NPC) in non-endemic areas
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary Epstein-Barr virus (EBV) related nasopharyngeal carcinoma (NPC) is an epithelial malignancy with higher incidence in Asian endemic area (EA) than in non-endemic area (NEA), where frequency is below 1/105/year. The causes of such difference are unclear and might be related to viral, environmental (e.g. diet) and genomic factors. We aimed at dissecting the gene expression (GE) and microenvironment landscape in NPC leading to the identification of molecular subtypes explaining the differences between EA and NEA.
Samples
GSM ID Sample info Characteristics Description
GSM6340119 LO75_NPC tissue:Nasopharyngeal carcinoma; gender:M; age:52; ebv:positive NPC_norm.txt
GSM6340120 LO76_NPC tissue:Nasopharyngeal carcinoma; gender:M; age:48; ebv:positive NPC_norm.txt
GSM6340121 LO77_NPC tissue:Nasopharyngeal carcinoma; gender:M; age:56; ebv:positive NPC_norm.txt
GSM6340122 LO78_NPC tissue:Nasopharyngeal carcinoma; gender:M; age:62; ebv:positive NPC_norm.txt
GSM6340123 LO79_NPC tissue:Nasopharyngeal carcinoma; gender:M; age:38; ebv:positive NPC_norm.txt
GSM6340124 LO80_NPC tissue:Nasopharyngeal carcinoma; gender:M; age:37; ebv:positive NPC_norm.txt
GSM6340125 LO96_NPC tissue:Nasopharyngeal carcinoma; gender:M; age:41; ebv:positive NPC_norm.txt
GSM6340126 LO97_NPC tissue:Nasopharyngeal carcinoma; gender:M; age:40; ebv:positive NPC_norm.txt
GSM6340127 LO98_NPC tissue:Nasopharyngeal carcinoma; gender:M; age:59; ebv:positive NPC_norm.txt
GSM6340128 LO99_NPC tissue:Nasopharyngeal carcinoma; gender:M; age:38; ebv:positive NPC_norm.txt
GSM6340129 LP00_NPC tissue:Nasopharyngeal carcinoma; gender:M; age:59; ebv:positive NPC_norm.txt
GSM6340130 LP01_NPC tissue:Nasopharyngeal carcinoma; gender:F; age:47; ebv:positive NPC_norm.txt
GSM6340131 LP02_NPC tissue:Nasopharyngeal carcinoma; gender:M; age:30; ebv:positive NPC_norm.txt
GSM6340132 LP10_NPC tissue:Nasopharyngeal carcinoma; gender:M; age:50; ebv:positive NPC_norm.txt
GSM6340133 LP12_NPC tissue:Nasopharyngeal carcinoma; gender:M; age:40; ebv:positive NPC_norm.txt
GSM6340134 LP13_NPC tissue:Nasopharyngeal carcinoma; gender:F; age:33; ebv:positive NPC_norm.txt
GSM6340135 LP30_NPC tissue:Nasopharyngeal carcinoma; gender:F; age:41; ebv:positive NPC_norm.txt
GSM6340136 LP31_NPC tissue:Nasopharyngeal carcinoma; gender:F; age:40; ebv:positive NPC_norm.txt
GSM6340137 LP32_NPC tissue:Nasopharyngeal carcinoma; gender:F; age:70; ebv:positive NPC_norm.txt
GSM6340138 LP33_NPC tissue:Nasopharyngeal carcinoma; gender:M; age:68; ebv:positive NPC_norm.txt
GSM6340139 LP34_NPC tissue:Nasopharyngeal carcinoma; gender:M; age:69; ebv:positive NPC_norm.txt
GSM6340140 LP35_NPC tissue:Nasopharyngeal carcinoma; gender:M; age:72; ebv:positive NPC_norm.txt
GSM6340141 LP36_NPC tissue:Nasopharyngeal carcinoma; gender:F; age:39; ebv:positive NPC_norm.txt
GSM6340142 LP37_NPC tissue:Nasopharyngeal carcinoma; gender:M; age:19; ebv:positive NPC_norm.txt
GSM6340143 LP38_NPC tissue:Nasopharyngeal carcinoma; gender:F; age:44; ebv:positive NPC_norm.txt
GSM6340144 LP39_NPC tissue:Nasopharyngeal carcinoma; gender:M; age:48; ebv:positive NPC_norm.txt
GSM6340145 LP40_NPC tissue:Nasopharyngeal carcinoma; gender:F; age:35; ebv:positive NPC_norm.txt
GSM6340146 LP41_NPC tissue:Nasopharyngeal carcinoma; gender:M; age:37; ebv:positive NPC_norm.txt
GSM6340147 LP42_NPC tissue:Nasopharyngeal carcinoma; gender:M; age:62; ebv:positive NPC_norm.txt
GSM6340148 LP43_NPC tissue:Nasopharyngeal carcinoma; gender:M; age:73; ebv:positive NPC_norm.txt
GSM6340149 LP44_NPC tissue:Nasopharyngeal carcinoma; gender:M; age:62; ebv:positive NPC_norm.txt
GSM6340150 LP45_NPC tissue:Nasopharyngeal carcinoma; gender:M; age:69; ebv:positive NPC_norm.txt
GSM6340151 LP46_NPC tissue:Nasopharyngeal carcinoma; gender:M; age:52; ebv:positive NPC_norm.txt
GSM6340152 LP47_NPC tissue:Nasopharyngeal carcinoma; gender:M; age:71; ebv:positive NPC_norm.txt
GSM6340153 LP48_NPC tissue:Nasopharyngeal carcinoma; gender:M; age:24; ebv:positive NPC_norm.txt
GSM6340154 LP49_NPC tissue:Nasopharyngeal carcinoma; gender:M; age:54; ebv:positive NPC_norm.txt
GSM6340155 LP50_NPC tissue:Nasopharyngeal carcinoma; gender:F; age:52; ebv:positive NPC_norm.txt
GSM6340156 NB07_NPC tissue:Nasopharyngeal carcinoma; gender:M; age:40; ebv:positive NPC_norm.txt
GSM6340157 NB08_NPC tissue:Nasopharyngeal carcinoma; gender:M; age:58; ebv:positive NPC_norm.txt
GSM6340158 NB09_NPC tissue:Nasopharyngeal carcinoma; gender:M; age:49; ebv:positive NPC_norm.txt
GSM6340159 NB10_NPC tissue:Nasopharyngeal carcinoma; gender:M; age:67; ebv:positive NPC_norm.txt
GSM6340110 LO66_NPC tissue:Nasopharyngeal carcinoma; gender:M; age:57; ebv:positive NPC_norm.txt
GSM6340111 LO67_NPC tissue:Nasopharyngeal carcinoma; gender:M; age:31; ebv:positive NPC_norm.txt
GSM6340112 LO68_NPC tissue:Nasopharyngeal carcinoma; gender:F; age:61; ebv:positive NPC_norm.txt
GSM6340113 LO69_NPC tissue:Nasopharyngeal carcinoma; gender:M; age:63; ebv:positive NPC_norm.txt
GSM6340114 LO70_NPC tissue:Nasopharyngeal carcinoma; gender:M; age:50; ebv:positive NPC_norm.txt
GSM6340115 LO71_NPC tissue:Nasopharyngeal carcinoma; gender:M; age:50; ebv:positive NPC_norm.txt
GSM6340116 LO72_NPC tissue:Nasopharyngeal carcinoma; gender:M; age:57; ebv:positive NPC_norm.txt
GSM6340117 LO73_NPC tissue:Nasopharyngeal carcinoma; gender:F; age:37; ebv:positive NPC_norm.txt
GSM6340118 LO74_NPC tissue:Nasopharyngeal carcinoma; gender:M; age:31; ebv:positive NPC_norm.txt
Platform GPL18573  : Illumina NextSeq 500 (Homo sapiens)
Literature 37949350  
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xCell Plot
* p<0.05 ** p<0.01