Virus Dataset Detail

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Dataset Information
Accession GSE218199
Status 2023/1/18
Title Comparative analysis of innate immune responses to viral infection among animals
Organism Homo sapiens;Macaca mulatta;Pan troglodytes;Rousettus aegyptiacus
Experiment type Expression profiling by high throughput sequencing
Summary Bats harbour various viruses without severe symptoms and act as natural reservoirs. This tolerance of bats toward viral infections is assumed to be originated from the uniqueness of their immune system. However, how the innate immune response varies between primates and bats remains unclear. To illuminate differences in innate immune responses among animal species, we performed a comparative single-cell RNA-sequencing analysis on peripheral blood mononuclear cells (PBMCs) from four species including Egyptian fruit bats inoculated with various infectious stimuli.
Samples
GSM ID Sample info Characteristics Description
GSM6736385 Homo sapiens PBL, mock tissue:peripheral blood; cell type:PBMC; treatment:Mock 10x Genomics
GSM6736386 Homo sapiens PBL, HSV-1 tissue:peripheral blood; cell type:PBMC; treatment:HSV-1 10x Genomics
GSM6736387 Homo sapiens PBL, SeV tissue:peripheral blood; cell type:PBMC; treatment:SeV 10x Genomics
GSM6736388 Homo sapiens PBL, LPS tissue:peripheral blood; cell type:PBMC; treatment:LPS 10x Genomics
GSM6736389 Pan troglodytes PBL, mock tissue:peripheral blood; cell type:PBMC; treatment:Mock 10x Genomics
GSM6736390 Pan troglodytes PBL, HSV-1 tissue:peripheral blood; cell type:PBMC; treatment:HSV-1 10x Genomics
GSM6736391 Pan troglodytes PBL, SeV tissue:peripheral blood; cell type:PBMC; treatment:SeV 10x Genomics
GSM6736392 Pan troglodytes PBL, LPS tissue:peripheral blood; cell type:PBMC; treatment:LPS 10x Genomics
GSM6736393 Macaca mulatta PBL, mock tissue:peripheral blood; cell type:PBMC; treatment:Mock 10x Genomics
GSM6736394 Macaca mulatta PBL, HSV-1 tissue:peripheral blood; cell type:PBMC; treatment:HSV-1 10x Genomics
GSM6736395 Macaca mulatta PBL, SeV tissue:peripheral blood; cell type:PBMC; treatment:SeV 10x Genomics
GSM6736396 Macaca mulatta PBL, LPS tissue:peripheral blood; cell type:PBMC; treatment:LPS 10x Genomics
GSM6736397 Rousettus aegyptiacus PBL, mock tissue:peripheral blood; cell type:PBMC; treatment:Mock 10x Genomics
GSM6736398 Rousettus aegyptiacus PBL, HSV-1 tissue:peripheral blood; cell type:PBMC; treatment:HSV-1 10x Genomics
GSM6736399 Rousettus aegyptiacus PBL, SeV tissue:peripheral blood; cell type:PBMC; treatment:SeV 10x Genomics
GSM6736400 Rousettus aegyptiacus PBL, LPS tissue:peripheral blood; cell type:PBMC; treatment:LPS 10x Genomics
Platform GPL24676  GPL27943  GPL30573  GPL30616  : Illumina NovaSeq 6000 (Homo sapiens);Illumina NovaSeq 6000 (Macaca mulatta);Illumina NovaSeq 6000 (Pan troglodytes);Illumina NovaSeq 6000 (Rousettus aegyptiacus)
Literature 37848618  
Download Download scRNA Analysis Data  
scRNA-seq UMAP