Virus Dataset Detail

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Dataset Information
Accession GSE228495
Status 2023/3/29
Title Encephalitis and poor neuronal death-mediated control of herpes simplex virus in human inherited RIPK3 deficiency
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary We hypothesize that human RIPK3 deficiency does not result in impairment of type I IFN mediated antiviral immunity, contrasting with the situation in deficiencies of the TLR3-IFNAR1 circuit. To test the cellular responses to HSV1 at the wide transcriptome level, bulk RNA sequencing was performed with human primary fibroblasts without or with HSV-1 infection for 24 hours, in cells from healthy controls, RIPK3 HSE patient and other patients with recessive TLR3, IFNAR1 or NEMO deficiency.
Samples
GSM ID Sample info Characteristics Description
GSM7122716 Control1_HSV cell type:mesenchymal stem Fibroblast Fibroblast Fibroblast Fibroblast Fibroblast Fibroblast Fibroblast Fibroblast Fibroblast Fibroblast Fibroblast Fibroblast Fibroblast Fibroblastcells; genotype:WT; treatment:HSV RIPK3_normalized_count.txt
GSM7122717 Control1_NS cell type:mesenchymal stem Fibroblast Fibroblast Fibroblast Fibroblast Fibroblast Fibroblast Fibroblast Fibroblast Fibroblast Fibroblast Fibroblast Fibroblast Fibroblast Fibroblastcells; genotype:WT; treatment:NS RIPK3_normalized_count.txt
GSM7122718 C286_HSV cell type:mesenchymal stem Fibroblast Fibroblast Fibroblast Fibroblast Fibroblast Fibroblast Fibroblast Fibroblast Fibroblast Fibroblast Fibroblast Fibroblast Fibroblast Fibroblastcells; genotype:WT; treatment:HSV RIPK3_normalized_count.txt
GSM7122719 C286_NS cell type:mesenchymal stem Fibroblast Fibroblast Fibroblast Fibroblast Fibroblast Fibroblast Fibroblast Fibroblast Fibroblast Fibroblast Fibroblast Fibroblast Fibroblast Fibroblastcells; genotype:WT; treatment:NS RIPK3_normalized_count.txt
GSM7122720 C288_HSV cell type:mesenchymal stem Fibroblast Fibroblast Fibroblast Fibroblast Fibroblast Fibroblast Fibroblast Fibroblast Fibroblast Fibroblast Fibroblast Fibroblast Fibroblast Fibroblastcells; genotype:WT; treatment:HSV RIPK3_normalized_count.txt
GSM7122721 C288_NS cell type:mesenchymal stem Fibroblast Fibroblast Fibroblast Fibroblast Fibroblast Fibroblast Fibroblast Fibroblast Fibroblast Fibroblast Fibroblast Fibroblast Fibroblast Fibroblastcells; genotype:WT; treatment:NS RIPK3_normalized_count.txt
GSM7122722 IFNAR1_HSV cell type:mesenchymal stem Fibroblast Fibroblast Fibroblast Fibroblast Fibroblast Fibroblast Fibroblast Fibroblast Fibroblast Fibroblast Fibroblast Fibroblast Fibroblast Fibroblastcells; genotype:IFNAR1; treatment:HSV RIPK3_normalized_count.txt
GSM7122723 IFNAR1_NS cell type:mesenchymal stem Fibroblast Fibroblast Fibroblast Fibroblast Fibroblast Fibroblast Fibroblast Fibroblast Fibroblast Fibroblast Fibroblast Fibroblast Fibroblast Fibroblastcells; genotype:IFNAR1; treatment:NS RIPK3_normalized_count.txt
GSM7122724 NEMO_HSV cell type:mesenchymal stem Fibroblast Fibroblast Fibroblast Fibroblast Fibroblast Fibroblast Fibroblast Fibroblast Fibroblast Fibroblast Fibroblast Fibroblast Fibroblast Fibroblastcells; genotype:NEMO; treatment:HSV RIPK3_normalized_count.txt
GSM7122725 NEMO_NS cell type:mesenchymal stem Fibroblast Fibroblast Fibroblast Fibroblast Fibroblast Fibroblast Fibroblast Fibroblast Fibroblast Fibroblast Fibroblast Fibroblast Fibroblast Fibroblastcells; genotype:NEMO; treatment:NS RIPK3_normalized_count.txt
GSM7122726 TLR3_HSV cell type:mesenchymal stem Fibroblast Fibroblast Fibroblast Fibroblast Fibroblast Fibroblast Fibroblast Fibroblast Fibroblast Fibroblast Fibroblast Fibroblast Fibroblast Fibroblastcells; genotype:TLR3; treatment:HSV RIPK3_normalized_count.txt
GSM7122727 TLR3_NS cell type:mesenchymal stem Fibroblast Fibroblast Fibroblast Fibroblast Fibroblast Fibroblast Fibroblast Fibroblast Fibroblast Fibroblast Fibroblast Fibroblast Fibroblast Fibroblastcells; genotype:TLR3; treatment:NS RIPK3_normalized_count.txt
GSM7122728 RIPK3_HSV cell type:mesenchymal stem Fibroblast Fibroblast Fibroblast Fibroblast Fibroblast Fibroblast Fibroblast Fibroblast Fibroblast Fibroblast Fibroblast Fibroblast Fibroblast Fibroblastcells; genotype:RIPK3; treatment:HSV RIPK3_normalized_count.txt
GSM7122729 RIPK3_NS cell type:mesenchymal stem Fibroblast Fibroblast Fibroblast Fibroblast Fibroblast Fibroblast Fibroblast Fibroblast Fibroblast Fibroblast Fibroblast Fibroblast Fibroblast Fibroblastcells; genotype:RIPK3; treatment:NS RIPK3_normalized_count.txt
Platform GPL24676  : Illumina NovaSeq 6000 (Homo sapiens)
Literature 37083451  
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* p<0.05 ** p<0.01