Virus Dataset Detail

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Dataset Information
Accession GSE233747
Status 2023/12/14
Title scRNA-seq analysis of human peripheral blood mononuclear cells collected at the acute HIV-1 infection timepoint
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary To identify host factors associated with HIV-1 control during acute infection, single cell gene expression profiles of immune cells were examined
Samples
GSM ID Sample info Characteristics Description
GSM7475280 CD4+ T cell gene expression from Participant P (chip1, lane5) during acute HIV-1 infection disease state:acute HIV-1 infection; tissue:CD4+ T cell; 10x chip:chip1; 10x lane:lane5 -
GSM7475281 CD4+ T cell gene expression from Participant P (chip1, lane6) during acute HIV-1 infection disease state:acute HIV-1 infection; tissue:CD4+ T cell; 10x chip:chip1; 10x lane:lane6 -
GSM7475282 CD4+ T cell gene expression from Participant P (chip1, lane7) during acute HIV-1 infection disease state:acute HIV-1 infection; tissue:CD4+ T cell; 10x chip:chip1; 10x lane:lane7 -
GSM7433929 Participant A (chip1, lane1) during acute HIV-1 infection tissue:PBMC; 10x chip:chip1; 10x lane:lane1 -
GSM7475283 CD4+ T cell gene expression from Participant P (chip1, lane8) during acute HIV-1 infection disease state:acute HIV-1 infection; tissue:CD4+ T cell; 10x chip:chip1; 10x lane:lane8 -
GSM7433930 Participant B (chip1, lane2) during acute HIV-1 infection tissue:PBMC; 10x chip:chip1; 10x lane:lane2 -
GSM7433931 Participant C (chip1, lane3) during acute HIV-1 infection tissue:PBMC; 10x chip:chip1; 10x lane:lane3 -
GSM7433932 Participant D (chip1, lane4) during acute HIV-1 infection tissue:PBMC; 10x chip:chip1; 10x lane:lane4 -
GSM7433933 Participant E (chip1, lane5) during acute HIV-1 infection tissue:PBMC; 10x chip:chip1; 10x lane:lane5 -
GSM7433934 Participant F (chip1, lane6) during acute HIV-1 infection tissue:PBMC; 10x chip:chip1; 10x lane:lane6 -
GSM7433935 Participant G (chip1, lane7) during acute HIV-1 infection tissue:PBMC; 10x chip:chip1; 10x lane:lane7 -
GSM7433936 Participant H (chip1, lane8) during acute HIV-1 infection tissue:PBMC; 10x chip:chip1; 10x lane:lane8 -
GSM7433937 Participant I (chip2, lane1) during acute HIV-1 infection tissue:PBMC; 10x chip:chip2; 10x lane:lane1 -
GSM7433938 Participant K (chip2, lane2) during acute HIV-1 infection tissue:PBMC; 10x chip:chip2; 10x lane:lane2 -
GSM7433939 Participant J (chip2, lane3) during acute HIV-1 infection tissue:PBMC; 10x chip:chip2; 10x lane:lane3 -
GSM7433940 Participant N (chip2, lane4) during acute HIV-1 infection tissue:PBMC; 10x chip:chip2; 10x lane:lane4 -
GSM7433941 Participant L (chip2, lane5) during acute HIV-1 infection tissue:PBMC; 10x chip:chip2; 10x lane:lane5 -
GSM7433942 Participant F (chip2, lane6) during acute HIV-1 infection tissue:PBMC; 10x chip:chip2; 10x lane:lane6 -
GSM7433943 Participant M (chip2, lane7) during acute HIV-1 infection tissue:PBMC; 10x chip:chip2; 10x lane:lane7 -
GSM7433944 Participant F (chip2, lane8) during acute HIV-1 infection tissue:PBMC; 10x chip:chip2; 10x lane:lane8 -
GSM7433945 Participant F (chip3, lane1) during acute HIV-1 infection tissue:PBMC; 10x chip:chip3; 10x lane:lane1 -
GSM7433946 Participant F (chip3, lane2) during acute HIV-1 infection tissue:PBMC; 10x chip:chip3; 10x lane:lane2 -
GSM7433947 Participant F (chip3, lane3) during acute HIV-1 infection tissue:PBMC; 10x chip:chip3; 10x lane:lane3 -
GSM7433948 Participant F (chip3, lane4) during acute HIV-1 infection tissue:PBMC; 10x chip:chip3; 10x lane:lane4 -
GSM7433949 Participant F (chip3, lane5) during acute HIV-1 infection tissue:PBMC; 10x chip:chip3; 10x lane:lane5 -
GSM7433950 Participant F (chip3, lane6) during acute HIV-1 infection tissue:PBMC; 10x chip:chip3; 10x lane:lane6 -
GSM7433951 Participant F (chip3, lane7) during acute HIV-1 infection tissue:PBMC; 10x chip:chip3; 10x lane:lane7 -
GSM7433952 Participant F (chip3, lane8) during acute HIV-1 infection tissue:PBMC; 10x chip:chip3; 10x lane:lane8 -
GSM7475268 CD4-CD8- T cell gene expression from Participant O (chip1, lane1) during acute HIV-1 infection disease state:acute HIV-1 infection; tissue:CD4-CD8- T cell; 10x chip:chip1; 10x lane:lane1 -
GSM7475269 CD4+ T cell gene expression from Participant O (chip1, lane2) during acute HIV-1 infection disease state:acute HIV-1 infection; tissue:CD4+ T cell; 10x chip:chip1; 10x lane:lane2 -
GSM7475270 CD4+ T cell gene expression from Participant O (chip1, lane3) during acute HIV-1 infection disease state:acute HIV-1 infection; tissue:CD4+ T cell; 10x chip:chip1; 10x lane:lane3 -
GSM7475271 CD4+ T cell gene expression from Participant O (chip1, lane4) during acute HIV-1 infection disease state:acute HIV-1 infection; tissue:CD4+ T cell; 10x chip:chip1; 10x lane:lane4 -
GSM7475272 CD4+ T cell gene expression from Participant O (chip1, lane5) during acute HIV-1 infection disease state:acute HIV-1 infection; tissue:CD4+ T cell; 10x chip:chip1; 10x lane:lane5 -
GSM7475273 CD4+ T cell gene expression from Participant O (chip1, lane6) during acute HIV-1 infection disease state:acute HIV-1 infection; tissue:CD4+ T cell; 10x chip:chip1; 10x lane:lane6 -
GSM7475274 CD4+ T cell gene expression from Participant O (chip1, lane7) during acute HIV-1 infection disease state:acute HIV-1 infection; tissue:CD4+ T cell; 10x chip:chip1; 10x lane:lane7 -
GSM7475275 CD4+ T cell gene expression from Participant O (chip1, lane8) during acute HIV-1 infection disease state:acute HIV-1 infection; tissue:CD4+ T cell; 10x chip:chip1; 10x lane:lane8 -
GSM7475276 CD4-CD8- T cell gene expression from Participant P (chip1, lane1) during acute HIV-1 infection disease state:acute HIV-1 infection; tissue:CD4+ T cell; 10x chip:chip1; 10x lane:lane1 -
GSM7475277 CD4+ T cell gene expression from Participant P (chip1, lane2) during acute HIV-1 infection disease state:acute HIV-1 infection; tissue:CD4+ T cell; 10x chip:chip1; 10x lane:lane2 -
GSM7475278 CD4+ T cell gene expression from Participant P (chip1, lane3) during acute HIV-1 infection disease state:acute HIV-1 infection; tissue:CD4+ T cell; 10x chip:chip1; 10x lane:lane3 -
GSM7475279 CD4+ T cell gene expression from Participant P (chip1, lane4) during acute HIV-1 infection disease state:acute HIV-1 infection; tissue:CD4+ T cell; 10x chip:chip1; 10x lane:lane4 -
Platform GPL24676  : Illumina NovaSeq 6000 (Homo sapiens)
Literature 37531416  
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scRNA-seq UMAP