Accession	GSE254741
Status	2024/12/6
Title	Human cytomegalovirus infection coopts chromatin organization to modulate TEAD1 transcription factor activity
Organism	Homo sapiens
Experiment type	Genome binding/occupancy profiling by high throughput sequencing;Expression profiling by high throughput sequencing
Summary	This SuperSeries is composed of the following SubSeries: GSE254734 Human cytomegalovirus infection coopts chromatin organization to modulate TEAD1 transcription factor activity [ATAC-seq] GSE254735 Human cytomegalovirus infection coopts chromatin organization to modulate TEAD1 transcription factor activity [RNA-Seq] GSE254736 Human cytomegalovirus infection coopts chromatin organization to modulate TEAD1 transcription factor activity [ChIP-seq] GSE254737 Human cytomegalovirus infection coopts chromatin organization to modulate TEAD1 transcription factor activity [HiChIP]
Samples	GSM ID Sample info Characteristics Description GSM8056975 ATAC-seq: HS68 Uninfected Replicate 1 cell line:HS68; cell type:Foreskin fibroblast; infection:None - GSM8056976 ATAC-seq: HS68 Uninfected Replicate 2 cell line:HS68; cell type:Foreskin fibroblast; infection:None - GSM8056977 ATAC-seq: HS68 HCMV-infected Replicate 1 cell line:HS68; cell type:Foreskin fibroblast; infection:TB40/E HCMV - GSM8056978 ATAC-seq: HS68 HCMV-infected Replicate 2 cell line:HS68; cell type:Foreskin fibroblast; infection:TB40/E HCMV - GSM8056979 ATAC-seq: ARPE-19 Uninfected Replicate 1 cell line:ARPE-19; cell type:Retinal epithelial; infection:None - GSM8056980 ATAC-seq: ARPE-19 Uninfected Replicate 2 cell line:ARPE-19; cell type:Retinal epithelial; infection:None - GSM8056981 ATAC-seq: ARPE-19 HCMV-infected Replicate 1 cell line:ARPE-19; cell type:Retinal epithelial; infection:TB40/E HCMV - GSM8056982 ATAC-seq: ARPE-19 HCMV-infected Replicate 2 cell line:ARPE-19; cell type:Retinal epithelial; infection:TB40/E HCMV - GSM8056983 RNA-seq: HS68 Uninfected Replicate 1 cell line:HS68; cell type:Foreskin fibroblast; infection:None - GSM8056984 RNA-seq: HS68 Uninfected Replicate 2 cell line:HS68; cell type:Foreskin fibroblast; infection:None - GSM8056985 RNA-seq: HS68 HCMV-infected Replicate 1 cell line:HS68; cell type:Foreskin fibroblast; infection:TB40/E HCMV - GSM8056986 RNA-seq: HS68 HCMV-infected Replicate 2 cell line:HS68; cell type:Foreskin fibroblast; infection:TB40/E HCMV - GSM8056987 H3K27ac ChIP-seq: HS68 Uninfected Replicate 1 cell line:HS68; cell type:Foreskin fibroblast; infection:None; chip antibody:Abcam ab4729, lot GR3357415-1 - GSM8056988 H3K27ac ChIP-seq: HS68 Uninfected Replicate 2 cell line:HS68; cell type:Foreskin fibroblast; infection:None; chip antibody:Abcam ab4729, lot GR3357415-1 - GSM8056989 H3K27ac ChIP-seq: HS68 HCMV-infected Replicate 1 cell line:HS68; cell type:Foreskin fibroblast; infection:TB40/E HCMV; chip antibody:Abcam ab4729, lot GR3357415-1 - GSM8056990 H3K27ac ChIP-seq: HS68 HCMV-infected Replicate 2 cell line:HS68; cell type:Foreskin fibroblast; infection:TB40/E HCMV; chip antibody:Abcam ab4729, lot GR3357415-1 - GSM8056991 CTCF ChIP-seq: HS68 Uninfected Replicate 1 cell line:HS68; cell type:Foreskin fibroblast; infection:None; chip antibody:ActiveMotif 61311, lot 17118005 - GSM8056992 CTCF ChIP-seq: HS68 Uninfected Replicate 2 cell line:HS68; cell type:Foreskin fibroblast; infection:None; chip antibody:ActiveMotif 61311, lot 17118005 - GSM8056993 CTCF ChIP-seq: HS68 HCMV-infected Replicate 1 cell line:HS68; cell type:Foreskin fibroblast; infection:TB40/E HCMV; chip antibody:ActiveMotif 61311, lot 17118005 - GSM8056994 CTCF ChIP-seq: HS68 HCMV-infected Replicate 2 cell line:HS68; cell type:Foreskin fibroblast; infection:TB40/E HCMV; chip antibody:ActiveMotif 61311, lot 17118005 - GSM8056995 TEAD1 ChIP-seq: HS68 Uninfected Replicate 1 cell line:HS68; cell type:Foreskin fibroblast; infection:None; chip antibody:ActiveMotif 61643, lot 34614001 - GSM8056996 TEAD1 ChIP-seq: HS68 Uninfected Replicate 2 cell line:HS68; cell type:Foreskin fibroblast; infection:None; chip antibody:ActiveMotif 61643, lot 34614001 - GSM8056997 TEAD1 ChIP-seq: HS68 HCMV-infected Replicate 1 cell line:HS68; cell type:Foreskin fibroblast; infection:TB40/E HCMV; chip antibody:ActiveMotif 61643, lot 34614001 - GSM8056998 TEAD1 ChIP-seq: HS68 HCMV-infected Replicate 2 cell line:HS68; cell type:Foreskin fibroblast; infection:TB40/E HCMV; chip antibody:ActiveMotif 61643, lot 34614001 - GSM8056999 H3K27ac HiChIP: HS68 Uninfected Replicate 1 cell line:HS68; cell type:Foreskin fibroblast; infection:None; chip antibody:Abcam ab4729, lot GR3374555-1 - GSM8057000 H3K27ac HiChIP: HS68 Uninfected Replicate 2 cell line:HS68; cell type:Foreskin fibroblast; infection:None; chip antibody:Abcam ab4729, lot GR3374555-1 - GSM8057001 H3K27ac HiChIP: HS68 Uninfected Replicate 3 cell line:HS68; cell type:Foreskin fibroblast; infection:None; chip antibody:Abcam ab4729, lot GR3374555-1 - GSM8057002 H3K27ac HiChIP: HS68 HCMV-infected Replicate 1 cell line:HS68; cell type:Foreskin fibroblast; infection:TB40/E HCMV; chip antibody:Abcam ab4729, lot GR3374555-1 - GSM8057003 H3K27ac HiChIP: HS68 HCMV-infected Replicate 2 cell line:HS68; cell type:Foreskin fibroblast; infection:TB40/E HCMV; chip antibody:Abcam ab4729, lot GR3374555-1 - GSM8057004 H3K27ac HiChIP: HS68 HCMV-infected Replicate 3 cell line:HS68; cell type:Foreskin fibroblast; infection:TB40/E HCMV; chip antibody:Abcam ab4729, lot GR3374555-1 -
Platform	GPL24676  : Illumina NovaSeq 6000 (Homo sapiens)
Literature
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