Virus Dataset Detail

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Dataset Information
Accession GSE272361
Status 2024/11/27
Title Herpes simplex virus 1 infection of human brain organoids and pancreatic stem cell-islets drives transcripts associated with Alzheimer’s disease and autoimmune diseases
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary Viral infections leading to inflammation have been implicated in several common diseases such as Alzheimer’s disease (AD) and type 1 diabetes (T1D). Of note, herpes simplex virus 1 (HSV-1) has been reported to be associated with AD. We sought to identify the transcriptomic changes due to HSV-1 infection and anti-viral drug (acyclovir, ACV) treatment of HSV-1 infection in dissoci-ated cells from human cerebral organoids (dcOrgs) versus stem cell-derived pancreatic islets (sc-islets) to gain potential biological insights into the relevance of HSV-1-induced inflammation in AD and T1D. We observed that differentially expressed genes (DEGs) in HSV-1-infected sc-islets were enriched for genes associated with several autoimmune diseases, most significantly T1D but also rheumatoid arthritis, psoriasis, Crohn’s disease, and multiple sclerosis, whereas DEGs in HSV-1-infected dcOrgs were exclusively enriched for genes associated with AD. ACV treatment of sc-islets did not rescue transcript expression of autoimmune disease-associated genes. Finally, we identified gene ontology categories that were enriched for DEGs that were in common across, or unique to, viral treatment of dcOrgs and sc-islets, such as categories involved in the transferase complex, mitochondrial and autophagy function. Collectively, this studies pro-vide insight to the molecular effects of inflammation in AD and T1D.
Samples
GSM ID Sample info Characteristics Description
GSM8399438 Uninfected_islets_1 tissue:iPSC-derived; cell line:Stem cell derived islets; cell type:sc-islets; genotype:Wildtype; treatment:Uninfected U1I
GSM8399439 Uninfected_islets_2 tissue:iPSC-derived; cell line:Stem cell derived islets; cell type:sc-islets; genotype:Wildtype; treatment:Uninfected U2I
GSM8399440 Uninfected_islets_3 tissue:iPSC-derived; cell line:Stem cell derived islets; cell type:sc-islets; genotype:Wildtype; treatment:Uninfected U3I
GSM8399441 HSV-1-infected_islets_1 tissue:iPSC-derived; cell line:Stem cell derived islets; cell type:sc-islets; genotype:Wildtype; treatment:HSV-1 infected H1I
GSM8399442 HSV-1-infected_islets_2 tissue:iPSC-derived; cell line:Stem cell derived islets; cell type:sc-islets; genotype:Wildtype; treatment:HSV-1 infected H2I
GSM8399443 HSV-1-infected_islets_3 tissue:iPSC-derived; cell line:Stem cell derived islets; cell type:sc-islets; genotype:Wildtype; treatment:HSV-1 infected H3I
GSM8399444 HSV-1-infected_and_ACV_treated_islets_1 tissue:iPSC-derived; cell line:Stem cell derived islets; cell type:sc-islets; genotype:Wildtype; treatment:HSV-1 infected and ACV treated A1I
GSM8399445 HSV-1-infected_and_ACV_treated_islets_2 tissue:iPSC-derived; cell line:Stem cell derived islets; cell type:sc-islets; genotype:Wildtype; treatment:HSV-1 infected and ACV treated A2I
GSM8399446 HSV-1-infected_and_ACV_treated_islets_3 tissue:iPSC-derived; cell line:Stem cell derived islets; cell type:sc-islets; genotype:Wildtype; treatment:HSV-1 infected and ACV treated A3I
Platform GPL24676  : Illumina NovaSeq 6000 (Homo sapiens)
Literature 39682726  
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* p<0.05 ** p<0.01