Virus Dataset Detail

> Detail information for each sample

Dataset Information
Accession GSE99081
Status 2020/5/11
Title External RNA Control Consortium (ERCC) spikes in RNA sequencing (RNA-Seq) data normalization: transcriptome analysis of yellow fever virus-infected cells
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary We explored the ability of External RNA Control Consortium (ERCC) standards to detect technical biases between batches of sequencing experiments and to set detection thresholds. We compared three normalization methods (FPKM, DESeq2 and RUV) to identify the optimal analysis approach.
Samples
GSM ID Sample info Characteristics Description
GSM2631992 Hep/Kup Control_1 cell type:hepatocytes + kupffer cells; model:pluricellular model; infection:control; time:24h post infection -
GSM2631993 Hep/Kup Control_2 cell type:hepatocytes + kupffer cells; model:pluricellular model; infection:control; time:24h post infection -
GSM2631994 Hep/Kup Control_3 cell type:hepatocytes + kupffer cells; model:pluricellular model; infection:control; time:24h post infection -
GSM2631995 Hep/Kup Control_4 cell type:hepatocytes + kupffer cells; model:pluricellular model; infection:control; time:24h post infection -
GSM2631996 Hep/Kup YFV Asibi_1 cell type:hepatocytes + kupffer cells; model:pluricellular model; infection:wild-type; time:24h post infection -
GSM2631997 Hep/Kup YFV Asibi_2 cell type:hepatocytes + kupffer cells; model:pluricellular model; infection:wild-type; time:24h post infection -
GSM2631998 Hep/Kup YFV Asibi_3 cell type:hepatocytes + kupffer cells; model:pluricellular model; infection:wild-type; time:24h post infection -
GSM2631999 Hep/Kup YFV Asibi_4 cell type:hepatocytes + kupffer cells; model:pluricellular model; infection:wild-type; time:24h post infection -
GSM2632000 Hep/Kup YFV 17D_1 cell type:hepatocytes + kupffer cells; model:pluricellular model; infection:vaccine; time:24h post infection -
GSM2632001 Hep/Kup YFV 17D_2 cell type:hepatocytes + kupffer cells; model:pluricellular model; infection:vaccine; time:24h post infection -
GSM2632002 Hep/Kup YFV 17D_3 cell type:hepatocytes + kupffer cells; model:pluricellular model; infection:vaccine; time:24h post infection -
GSM2632003 Hep/Kup YFV 17D_4 cell type:hepatocytes + kupffer cells; model:pluricellular model; infection:vaccine; time:24h post infection -
GSM2632004 Hep Control_1 cell type:hepatocytes; model:monocellular model; infection:control; time:24h post infection -
GSM2632005 Hep Control_2 cell type:hepatocytes; model:monocellular model; infection:control; time:24h post infection -
GSM2632006 Hep Control_3 cell type:hepatocytes; model:monocellular model; infection:control; time:24h post infection -
GSM2632007 Hep Control_4 cell type:hepatocytes; model:monocellular model; infection:control; time:24h post infection -
GSM2632008 Hep YFV 17D_1 cell type:hepatocytes; model:monocellular model; infection:vaccine; time:24h post infection -
GSM2632009 Hep YFV 17D_2 cell type:hepatocytes; model:monocellular model; infection:vaccine; time:24h post infection -
GSM2632010 Hep YFV 17D_3 cell type:hepatocytes; model:monocellular model; infection:vaccine; time:24h post infection -
GSM2632011 Hep YFV 17D_4 cell type:hepatocytes; model:monocellular model; infection:vaccine; time:24h post infection -
GSM2632012 Hep YFV Asibi_1 cell type:hepatocytes; model:monocellular model; infection:wild-type; time:24h post infection -
GSM2632013 Hep YFV Asibi_2 cell type:hepatocytes; model:monocellular model; infection:wild-type; time:24h post infection -
GSM2632014 Hep YFV Asibi_3 cell type:hepatocytes; model:monocellular model; infection:wild-type; time:24h post infection -
GSM2632015 Hep YFV Asibi_4 cell type:hepatocytes; model:monocellular model; infection:wild-type; time:24h post infection -
Platform GPL16791  : Illumina HiSeq 2500 (Homo sapiens)
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* p<0.05 ** p<0.01