HIV Target gene Detail Information

> PCNX1 Gene Search Result


Gene Information
Gene Name PCNX1
Gene ID 22990
Gene Full Name pecanex 1
Gene Alias PCNX|PCNXL1|pecanex
Transcripts ENSG00000100731
Virus HIV
Gene Type protein-coding
HPA Location Info Nucleoplasm;
Membrane Info Predicted intracellular proteins, Predicted membrane proteins
Uniport_ID Q96RV3
HGNC ID HGNC:19740
OMIM ID 617655
Summary This gene encodes an evolutionarily conserved transmembrane protein similar to the pecanex protein in Drosophila. The fly protein is a component of the Notch signaling pathway, which functions in several developmental processes. [provided by RefSeq, Jul 2016]
Target gene [PCNX1] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
4000212 chr14 451 162 114 727 View
4005852 chr14 29 0 0 29 View
4006327 chr14 23 2 0 25 View
4006362 chr14 23 2 0 25 View
4006410 chr14 23 2 0 25 View
4007966 chr14 16 1 0 17 View
4008524 chr14 0 14 1 15 View
4013432 chr14 2 1 0 3 View
4013433 chr14 3 0 0 3 View
4014690 chr14 1 1 0 2 View
4014691 chr14 2 0 0 2 View
4015035 chr14 0 1 0 1 View
4016078 chr14 0 0 0 0 View
4016219 chr14 0 0 0 0 View
4016590 chr14 0 0 0 0 View
4016591 chr14 0 0 0 0 View
4016592 chr14 0 0 0 0 View

Target gene [PCNX1] related to Omics data
Data ID Experiment type Sample number Platform
C
  GSE221688 		Chip-seq;scATAC-Seq;scRNA-Seq 12 Illumina NovaSeq 6000 (Homo sapiens)
GSE144332 RNA-seq 75 NextSeq 550 (Homo sapiens)
C
  GSE165705 		Chip-seq 30 Illumina NovaSeq 6000 (Homo sapiens)
GSE164264 RNA-seq 6 BGISEQ-500 (Homo sapiens)
C
  GSE30738 		Chip-seq 2 Illumina Genome Analyzer II (Homo sapiens)
GSE128121 RNA-seq 16 Illumina HiSeq 4000 (Homo sapiens)
GSE162914 RNA-seq 211 Illumina HiSeq 2500 (Homo sapiens)
C
  GSE144329 		ATAC-seq 96 NextSeq 550 (Homo sapiens)
GSE205204 RNA-seq 14 Illumina NovaSeq 6000 (Homo sapiens)
GSE125686 RNA-seq 62 Illumina HiSeq 2000 (Homo sapiens);Illumina HiSeq 2500 (Homo sapiens);Illumina NextSeq 500 (Homo sapiens)
C
  GSE220859 		Chip-seq 11 Illumina NovaSeq 6000 (Homo sapiens)
GSE165708 RNA-seq 100 Illumina HiSeq 4000 (Homo sapiens)
C
  GSE211651 		Chip-seq;RNA-seq;PRO-seq 39 Illumina NextSeq 500 (Homo sapiens);Illumina NovaSeq 6000 (Homo sapiens)
GSE68028 MeDIP-chip 1 NimbleGen Human DNA Methylation 2.1M Deluxe Promoter Array [100929_HG19_Deluxe_Prom_Meth_HX1]
C
  GSE100376 		ATAC-seq 24 Illumina NextSeq 500 (Homo sapiens)
GSE167211 RNA-seq 1 Illumina HiSeq 2000 (Homo sapiens)
GSE165132 RNA-seq 56 NextSeq 550 (Homo sapiens)
GSE228078 scRNA-seq 12 Illumina NovaSeq 6000 (Homo sapiens)
C
  GSE100266 		ATAC-seq;Chip-seq;RNA-seq 32 Illumina HiSeq 2500 (Homo sapiens)
C
  GSE165703 		ATAC-seq 82 Illumina HiSeq 4000 (Homo sapiens)
GSE246082 RNA-seq 6 Illumina HiSeq 4000 (Homo sapiens)


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE221688 - PCNX1 peak across samples

Peak Plot

> Dataset: GSE165705 - PCNX1 peak across samples

Peak Plot

> Dataset: GSE30738 - PCNX1 peak across samples

Peak Plot

> Dataset: GSE144329 - PCNX1 peak across samples

Peak Plot

> Dataset: GSE220859 - PCNX1 peak across samples

Peak Plot

> Dataset: GSE211651 - PCNX1 peak across samples

Peak Plot

> Dataset: GSE100376 - PCNX1 peak across samples

Peak Plot

> Dataset: GSE100266 - PCNX1 peak across samples

Peak Plot

> Dataset: GSE165703 - PCNX1 peak across samples

Peak Plot