HIV Target gene Detail Information

> SEC16A Gene Search Result


Gene Information
Gene Name SEC16A
Gene ID 9919
Gene Full Name SEC16 homolog A, endoplasmic reticulum export factor
Gene Alias KIAA0310|SEC16L|p250
Transcripts ENSG00000148396
Virus HIV
Gene Type protein-coding
HPA Location Info Golgi apparatus;Endoplasmic reticulum;
Membrane Info Predicted intracellular proteins
Uniport_ID O15027
HGNC ID HGNC:29006
OMIM ID 612854
Summary This gene encodes a protein that forms part of the Sec16 complex. This protein has a role in protein transport from the endoplasmic reticulum (ER) to the Golgi and mediates COPII vesicle formation at the transitional ER. Alternative splicing results in multiple transcript variants that encode different protein isoforms. [provided by RefSeq, Feb 2013]
Target gene [SEC16A] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
4002157 chr9 107 2 0 109 View
4002727 chr9 65 17 0 82 View
4004111 chr9 11 30 8 49 View
4004813 chr9 12 25 2 39 View
4005465 chr9 31 1 0 32 View
4006014 chr9 14 14 0 28 View
4006551 chr9 3 9 12 24 View
4008859 chr9 10 3 0 13 View
4011342 chr9 3 2 2 7 View
4012617 chr9 4 0 0 4 View
4013755 chr9 3 0 0 3 View

Target gene [SEC16A] related to Omics data
Data ID Experiment type Sample number Platform
C
  GSE221688 		Chip-seq;scATAC-Seq;scRNA-Seq 12 Illumina NovaSeq 6000 (Homo sapiens)
GSE99737 RNA-seq 9 Illumina HiSeq 2500 (Homo sapiens)
GSE144332 RNA-seq 75 NextSeq 550 (Homo sapiens)
C
  GSE165705 		Chip-seq 30 Illumina NovaSeq 6000 (Homo sapiens)
GSE164264 RNA-seq 6 BGISEQ-500 (Homo sapiens)
GSE262621 RNA-seq 70 Illumina NovaSeq 6000 (Homo sapiens)
GSE128121 RNA-seq 16 Illumina HiSeq 4000 (Homo sapiens)
GSE162914 RNA-seq 211 Illumina HiSeq 2500 (Homo sapiens)
GSE279982 Methylation profiling (Array) 576 Infinium MethylationEPIC
C
  GSE144329 		ATAC-seq 96 NextSeq 550 (Homo sapiens)
GSE205204 RNA-seq 14 Illumina NovaSeq 6000 (Homo sapiens)
GSE125686 RNA-seq 62 Illumina HiSeq 2000 (Homo sapiens);Illumina HiSeq 2500 (Homo sapiens);Illumina NextSeq 500 (Homo sapiens)
GSE198339 scRNA-seq 8 Illumina NovaSeq 6000 (Homo sapiens)
C
  GSE220859 		Chip-seq 11 Illumina NovaSeq 6000 (Homo sapiens)
GSE165708 RNA-seq 100 Illumina HiSeq 4000 (Homo sapiens)
C
  GSE211651 		Chip-seq;RNA-seq;PRO-seq 39 Illumina NextSeq 500 (Homo sapiens);Illumina NovaSeq 6000 (Homo sapiens)
GSE68028 MeDIP-chip 1 NimbleGen Human DNA Methylation 2.1M Deluxe Promoter Array [100929_HG19_Deluxe_Prom_Meth_HX1]
C
  GSE100376 		ATAC-seq 24 Illumina NextSeq 500 (Homo sapiens)
GSE167211 RNA-seq 1 Illumina HiSeq 2000 (Homo sapiens)
GSE165132 RNA-seq 56 NextSeq 550 (Homo sapiens)
C
  GSE100266 		ATAC-seq;Chip-seq;RNA-seq 32 Illumina HiSeq 2500 (Homo sapiens)
C
  GSE165703 		ATAC-seq 82 Illumina HiSeq 4000 (Homo sapiens)
GSE246082 RNA-seq 6 Illumina HiSeq 4000 (Homo sapiens)


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE221688 - SEC16A peak across samples

Peak Plot

> Dataset: GSE165705 - SEC16A peak across samples

Peak Plot

> Dataset: GSE144329 - SEC16A peak across samples

Peak Plot

> Dataset: GSE220859 - SEC16A peak across samples

Peak Plot

> Dataset: GSE211651 - SEC16A peak across samples

Peak Plot

> Dataset: GSE100376 - SEC16A peak across samples

Peak Plot

> Dataset: GSE100266 - SEC16A peak across samples

Peak Plot

> Dataset: GSE165703 - SEC16A peak across samples

Peak Plot