HIV Target gene Detail Information

> DDX42 Gene Search Result


Gene Information
Gene Name DDX42
Gene ID 11325
Gene Full Name DEAD-box helicase 42
Gene Alias DDX42P|RHELP|RNAHP|SF3B8|SF3b125
Transcripts ENSG00000198231
Virus HIV
Gene Type protein-coding
HPA Location Info Nuclear speckles;
Membrane Info Enzymes, Plasma proteins, Predicted intracellular proteins
Uniport_ID Q86XP3
HGNC ID HGNC:18676
OMIM ID 613369
Summary This gene encodes a member of the Asp-Glu-Ala-Asp (DEAD) box protein family. Members of this protein family are putative RNA helicases, and are implicated in a number of cellular processes involving alteration of RNA secondary structure such as translation initiation, nuclear and mitochondrial splicing, and ribosome and spliceosome assembly. Members of this family are believed to be involved in embryogenesis, spermatogenesis, and cellular growth and division. Two transcript variants encoding the same protein have been identified for this gene. [provided by RefSeq, Jul 2008]
Target gene [DDX42] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
4005496 chr17 32 0 0 32 View
4006656 chr17 13 6 4 23 View
4007222 chr17 18 2 0 20 View
4008943 chr17 6 7 0 13 View
4009331 chr17 9 1 2 12 View
4012919 chr17 3 1 0 4 View
4013173 chr17 3 1 0 4 View
4014163 chr17 2 0 0 2 View

Target gene [DDX42] related to Omics data
Data ID Experiment type Sample number Platform
C
  GSE221688 		Chip-seq;scATAC-Seq;scRNA-Seq 12 Illumina NovaSeq 6000 (Homo sapiens)
GSE99737 RNA-seq 9 Illumina HiSeq 2500 (Homo sapiens)
GSE144332 RNA-seq 75 NextSeq 550 (Homo sapiens)
C
  GSE165705 		Chip-seq 30 Illumina NovaSeq 6000 (Homo sapiens)
GSE164264 RNA-seq 6 BGISEQ-500 (Homo sapiens)
C
  GSE30738 		Chip-seq 2 Illumina Genome Analyzer II (Homo sapiens)
GSE262621 RNA-seq 70 Illumina NovaSeq 6000 (Homo sapiens)
GSE128121 RNA-seq 16 Illumina HiSeq 4000 (Homo sapiens)
GSE162914 RNA-seq 211 Illumina HiSeq 2500 (Homo sapiens)
GSE279982 Methylation profiling (Array) 576 Infinium MethylationEPIC
C
  GSE144329 		ATAC-seq 96 NextSeq 550 (Homo sapiens)
GSE205204 RNA-seq 14 Illumina NovaSeq 6000 (Homo sapiens)
GSE125686 RNA-seq 62 Illumina HiSeq 2000 (Homo sapiens);Illumina HiSeq 2500 (Homo sapiens);Illumina NextSeq 500 (Homo sapiens)
C
  GSE220859 		Chip-seq 11 Illumina NovaSeq 6000 (Homo sapiens)
GSE165708 RNA-seq 100 Illumina HiSeq 4000 (Homo sapiens)
C
  GSE211651 		Chip-seq;RNA-seq;PRO-seq 39 Illumina NextSeq 500 (Homo sapiens);Illumina NovaSeq 6000 (Homo sapiens)
C
  GSE100376 		ATAC-seq 24 Illumina NextSeq 500 (Homo sapiens)
GSE167211 RNA-seq 1 Illumina HiSeq 2000 (Homo sapiens)
GSE165132 RNA-seq 56 NextSeq 550 (Homo sapiens)
GSE228078 scRNA-seq 12 Illumina NovaSeq 6000 (Homo sapiens)
C
  GSE100266 		ATAC-seq;Chip-seq;RNA-seq 32 Illumina HiSeq 2500 (Homo sapiens)
C
  GSE165703 		ATAC-seq 82 Illumina HiSeq 4000 (Homo sapiens)
GSE246082 RNA-seq 6 Illumina HiSeq 4000 (Homo sapiens)


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE221688 - DDX42 peak across samples

Peak Plot

> Dataset: GSE165705 - DDX42 peak across samples

Peak Plot

> Dataset: GSE30738 - DDX42 peak across samples

Peak Plot

> Dataset: GSE144329 - DDX42 peak across samples

Peak Plot

> Dataset: GSE220859 - DDX42 peak across samples

Peak Plot

> Dataset: GSE211651 - DDX42 peak across samples

Peak Plot

> Dataset: GSE100376 - DDX42 peak across samples

Peak Plot

> Dataset: GSE100266 - DDX42 peak across samples

Peak Plot

> Dataset: GSE165703 - DDX42 peak across samples

Peak Plot