HIV Target gene Detail Information

> GATAD2B Gene Search Result


Gene Information
Gene Name GATAD2B
Gene ID 57459
Gene Full Name GATA zinc finger domain containing 2B
Gene Alias GANDS|MRD18|P66beta|p68
Transcripts ENSG00000143614
Virus HIV
Gene Type protein-coding
HPA Location Info Nucleoplasm;
Membrane Info Disease related genes, Human disease related genes, Plasma proteins, Predicted intracellular proteins, Transcription factors
Uniport_ID Q8WXI9
HGNC ID HGNC:30778
OMIM ID 614998
Summary This gene encodes a zinc finger protein transcriptional repressor. The encoded protein is part of the methyl-CpG-binding protein-1 complex, which represses gene expression by deacetylating methylated nucleosomes. Mutations in this gene are linked to intellectual disability and dysmorphic features associated with cognitive disability. [provided by RefSeq, Jun 2016]
Target gene [GATAD2B] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
4000245 chr1 560 18 73 651 View
4000695 chr1 81 155 78 314 View
4006504 chr1 20 3 1 24 View
4010474 chr1 7 2 0 9 View
4011416 chr1 7 0 0 7 View
4011547 chr1 6 0 0 6 View
4011548 chr1 5 1 0 6 View
4011674 chr1 4 2 0 6 View
4012042 chr1 4 1 0 5 View
4012183 chr1 4 1 0 5 View
4012184 chr1 5 0 0 5 View
4014115 chr1 2 0 0 2 View
4014960 chr1 1 0 0 1 View
4014961 chr1 1 0 0 1 View

Target gene [GATAD2B] related to Omics data
Data ID Experiment type Sample number Platform
C
  GSE221688 		Chip-seq;scATAC-Seq;scRNA-Seq 12 Illumina NovaSeq 6000 (Homo sapiens)
GSE99737 RNA-seq 9 Illumina HiSeq 2500 (Homo sapiens)
GSE144332 RNA-seq 75 NextSeq 550 (Homo sapiens)
C
  GSE165705 		Chip-seq 30 Illumina NovaSeq 6000 (Homo sapiens)
GSE164264 RNA-seq 6 BGISEQ-500 (Homo sapiens)
C
  GSE30738 		Chip-seq 2 Illumina Genome Analyzer II (Homo sapiens)
GSE262621 RNA-seq 70 Illumina NovaSeq 6000 (Homo sapiens)
GSE128121 RNA-seq 16 Illumina HiSeq 4000 (Homo sapiens)
GSE162914 RNA-seq 211 Illumina HiSeq 2500 (Homo sapiens)
GSE279982 Methylation profiling (Array) 576 Infinium MethylationEPIC
C
  GSE144329 		ATAC-seq 96 NextSeq 550 (Homo sapiens)
GSE205204 RNA-seq 14 Illumina NovaSeq 6000 (Homo sapiens)
GSE125686 RNA-seq 62 Illumina HiSeq 2000 (Homo sapiens);Illumina HiSeq 2500 (Homo sapiens);Illumina NextSeq 500 (Homo sapiens)
GSE233747 scRNA-seq 40 Illumina NovaSeq 6000 (Homo sapiens)
C
  GSE220859 		Chip-seq 11 Illumina NovaSeq 6000 (Homo sapiens)
GSE165708 RNA-seq 100 Illumina HiSeq 4000 (Homo sapiens)
C
  GSE211651 		Chip-seq;RNA-seq;PRO-seq 39 Illumina NextSeq 500 (Homo sapiens);Illumina NovaSeq 6000 (Homo sapiens)
GSE68028 MeDIP-chip 1 NimbleGen Human DNA Methylation 2.1M Deluxe Promoter Array [100929_HG19_Deluxe_Prom_Meth_HX1]
C
  GSE100376 		ATAC-seq 24 Illumina NextSeq 500 (Homo sapiens)
GSE167211 RNA-seq 1 Illumina HiSeq 2000 (Homo sapiens)
C
  GSE100266 		ATAC-seq;Chip-seq;RNA-seq 32 Illumina HiSeq 2500 (Homo sapiens)
C
  GSE165703 		ATAC-seq 82 Illumina HiSeq 4000 (Homo sapiens)
GSE246082 RNA-seq 6 Illumina HiSeq 4000 (Homo sapiens)


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE221688 - GATAD2B peak across samples

Peak Plot

> Dataset: GSE165705 - GATAD2B peak across samples

Peak Plot

> Dataset: GSE30738 - GATAD2B peak across samples

Peak Plot

> Dataset: GSE144329 - GATAD2B peak across samples

Peak Plot

> Dataset: GSE220859 - GATAD2B peak across samples

Peak Plot

> Dataset: GSE211651 - GATAD2B peak across samples

Peak Plot

> Dataset: GSE100376 - GATAD2B peak across samples

Peak Plot

> Dataset: GSE100266 - GATAD2B peak across samples

Peak Plot

> Dataset: GSE165703 - GATAD2B peak across samples

Peak Plot