Gene Name	VPS13D
Gene ID	55187
Gene Full Name	vacuolar protein sorting 13 homolog D
Gene Alias	BLTP5D|SCA24|SCAR4|SCASI
Transcripts	ENSG00000048707
Virus	HIV
Gene Type	protein-coding
HPA Location Info	Nucleoplasm, Vesicles;Cytosol;
Membrane Info	Disease related genes, Human disease related genes, Predicted intracellular proteins
Uniport_ID	Q5THJ4
HGNC ID	HGNC:23595
OMIM ID	608877
Summary	This gene encodes a protein belonging to the vacuolar-protein-sorting-13 gene family. In yeast, vacuolar-protein-sorting-13 proteins are involved in trafficking of membrane proteins between the trans-Golgi network and the prevacuolar compartment. While several transcript variants may exist for this gene, the full-length natures of only two have been described to date. These two represent the major variants of this gene and encode distinct isoforms. [provided by RefSeq, Jul 2008]

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section

DVID	Chromosome	HM	TFBS	CA	Sum of Overlapped Records	Detail
4000513	chr1	172	56	179	407	View
4002268	chr1	94	8	0	102	View
4002305	chr1	24	59	17	100	View
4003984	chr1	49	2	0	51	View
4006981	chr1	17	4	0	21	View
4007028	chr1	21	0	0	21	View
4007029	chr1	19	2	0	21	View
4007644	chr1	12	4	2	18	View
4009878	chr1	10	0	0	10	View
4010811	chr1	1	6	1	8	View
4011665	chr1	5	0	1	6	View
4012825	chr1	4	0	0	4	View
4013828	chr1	3	0	0	3	View
4016817	chr1	11	2	0	13	View

Data ID	Experiment type	Sample number	Platform
C   GSE221688	Chip-seq;scATAC-Seq;scRNA-Seq	12	Illumina NovaSeq 6000 (Homo sapiens)
GSE99737	RNA-seq	9	Illumina HiSeq 2500 (Homo sapiens)
GSE144332	RNA-seq	75	NextSeq 550 (Homo sapiens)
C   GSE165705	Chip-seq	30	Illumina NovaSeq 6000 (Homo sapiens)
GSE164264	RNA-seq	6	BGISEQ-500 (Homo sapiens)
C   GSE30738	Chip-seq	2	Illumina Genome Analyzer II (Homo sapiens)
GSE262621	RNA-seq	70	Illumina NovaSeq 6000 (Homo sapiens)
GSE128121	RNA-seq	16	Illumina HiSeq 4000 (Homo sapiens)
GSE162914	RNA-seq	211	Illumina HiSeq 2500 (Homo sapiens)
GSE279982	Methylation profiling (Array)	576	Infinium MethylationEPIC
C   GSE144329	ATAC-seq	96	NextSeq 550 (Homo sapiens)
GSE205204	RNA-seq	14	Illumina NovaSeq 6000 (Homo sapiens)
GSE125686	RNA-seq	62	Illumina HiSeq 2000 (Homo sapiens);Illumina HiSeq 2500 (Homo sapiens);Illumina NextSeq 500 (Homo sapiens)
GSE233747	scRNA-seq	40	Illumina NovaSeq 6000 (Homo sapiens)
C   GSE220859	Chip-seq	11	Illumina NovaSeq 6000 (Homo sapiens)
GSE165708	RNA-seq	100	Illumina HiSeq 4000 (Homo sapiens)
C   GSE211651	Chip-seq;RNA-seq;PRO-seq	39	Illumina NextSeq 500 (Homo sapiens);Illumina NovaSeq 6000 (Homo sapiens)
GSE68028	MeDIP-chip	1	NimbleGen Human DNA Methylation 2.1M Deluxe Promoter Array [100929_HG19_Deluxe_Prom_Meth_HX1]
C   GSE100376	ATAC-seq	24	Illumina NextSeq 500 (Homo sapiens)
GSE167211	RNA-seq	1	Illumina HiSeq 2000 (Homo sapiens)
GSE165132	RNA-seq	56	NextSeq 550 (Homo sapiens)
C   GSE100266	ATAC-seq;Chip-seq;RNA-seq	32	Illumina HiSeq 2500 (Homo sapiens)
C   GSE165703	ATAC-seq	82	Illumina HiSeq 4000 (Homo sapiens)
GSE246082	RNA-seq	6	Illumina HiSeq 4000 (Homo sapiens)

• Genome binding/occupancy profiling

When the gene can detect a peak in the dataset, a peak plot will be displayed.

> Dataset: GSE221688 - VPS13D peak across samples

Peak Plot

> Dataset: GSE165705 - VPS13D peak across samples

Peak Plot

> Dataset: GSE30738 - VPS13D peak across samples

Peak Plot

> Dataset: GSE144329 - VPS13D peak across samples

Peak Plot

> Dataset: GSE220859 - VPS13D peak across samples

Peak Plot

> Dataset: GSE211651 - VPS13D peak across samples

Peak Plot

> Dataset: GSE100376 - VPS13D peak across samples

Peak Plot

> Dataset: GSE100266 - VPS13D peak across samples

Peak Plot

> Dataset: GSE165703 - VPS13D peak across samples

Peak Plot