HIV Target gene Detail Information

> CLIP1 Gene Search Result


Gene Information
Gene Name CLIP1
Gene ID 6249
Gene Full Name CAP-Gly domain containing linker protein 1
Gene Alias CLIP|CLIP-170|CLIP170|CYLN1|RSN
Transcripts ENSG00000130779
Virus HIV
Gene Type protein-coding
HPA Location Info Microtubule ends, Mid piece;Cytosol, Principal piece;
Membrane Info Cancer-related genes, Plasma proteins, Predicted intracellular proteins
Uniport_ID P30622
HGNC ID HGNC:10461
OMIM ID 179838
Summary The protein encoded by this gene links endocytic vesicles to microtubules. This gene is highly expressed in Reed-Sternberg cells of Hodgkin disease. Several transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Oct 2011]
Target gene [CLIP1] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
4000256 chr12 215 238 183 636 View
4000257 chr12 577 45 13 635 View
4000703 chr12 297 9 5 311 View
4004022 chr12 39 8 3 50 View
4005199 chr12 34 1 0 35 View
4005244 chr12 26 8 0 34 View
4009906 chr12 5 5 0 10 View
4010397 chr12 3 3 3 9 View
4010827 chr12 1 7 0 8 View
4014135 chr12 2 0 0 2 View

Target gene [CLIP1] related to Omics data
Data ID Experiment type Sample number Platform
C
  GSE221688 		Chip-seq;scATAC-Seq;scRNA-Seq 12 Illumina NovaSeq 6000 (Homo sapiens)
GSE99737 RNA-seq 9 Illumina HiSeq 2500 (Homo sapiens)
GSE144332 RNA-seq 75 NextSeq 550 (Homo sapiens)
GSE157829 scRNA-seq 7 Illumina HiSeq 2500 (Homo sapiens)
C
  GSE165705 		Chip-seq 30 Illumina NovaSeq 6000 (Homo sapiens)
GSE164264 RNA-seq 6 BGISEQ-500 (Homo sapiens)
GSE262621 RNA-seq 70 Illumina NovaSeq 6000 (Homo sapiens)
GSE202410 scRNA-seq 24 Illumina HiSeq 4000 (Homo sapiens)
GSE128121 RNA-seq 16 Illumina HiSeq 4000 (Homo sapiens)
GSE162914 RNA-seq 211 Illumina HiSeq 2500 (Homo sapiens)
GSE187515 scRNA-seq 104 Illumina MiSeq (Homo sapiens);Illumina HiSeq 4000 (Homo sapiens);Illumina NovaSeq 6000 (Homo sapiens)
GSE279982 Methylation profiling (Array) 576 Infinium MethylationEPIC
C
  GSE144329 		ATAC-seq 96 NextSeq 550 (Homo sapiens)
GSE205204 RNA-seq 14 Illumina NovaSeq 6000 (Homo sapiens)
GSE125686 RNA-seq 62 Illumina HiSeq 2000 (Homo sapiens);Illumina HiSeq 2500 (Homo sapiens);Illumina NextSeq 500 (Homo sapiens)
GSE198339 scRNA-seq 8 Illumina NovaSeq 6000 (Homo sapiens)
GSE233747 scRNA-seq 40 Illumina NovaSeq 6000 (Homo sapiens)
C
  GSE220859 		Chip-seq 11 Illumina NovaSeq 6000 (Homo sapiens)
GSE165708 RNA-seq 100 Illumina HiSeq 4000 (Homo sapiens)
C
  GSE211651 		Chip-seq;RNA-seq;PRO-seq 39 Illumina NextSeq 500 (Homo sapiens);Illumina NovaSeq 6000 (Homo sapiens)
GSE68028 MeDIP-chip 1 NimbleGen Human DNA Methylation 2.1M Deluxe Promoter Array [100929_HG19_Deluxe_Prom_Meth_HX1]
C
  GSE100376 		ATAC-seq 24 Illumina NextSeq 500 (Homo sapiens)
GSE167211 RNA-seq 1 Illumina HiSeq 2000 (Homo sapiens)
GSE165132 RNA-seq 56 NextSeq 550 (Homo sapiens)
C
  GSE100266 		ATAC-seq;Chip-seq;RNA-seq 32 Illumina HiSeq 2500 (Homo sapiens)
C
  GSE165703 		ATAC-seq 82 Illumina HiSeq 4000 (Homo sapiens)
GSE246082 RNA-seq 6 Illumina HiSeq 4000 (Homo sapiens)


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE221688 - CLIP1 peak across samples

Peak Plot

> Dataset: GSE165705 - CLIP1 peak across samples

Peak Plot

> Dataset: GSE144329 - CLIP1 peak across samples

Peak Plot

> Dataset: GSE220859 - CLIP1 peak across samples

Peak Plot

> Dataset: GSE211651 - CLIP1 peak across samples

Peak Plot

> Dataset: GSE100376 - CLIP1 peak across samples

Peak Plot

> Dataset: GSE100266 - CLIP1 peak across samples

Peak Plot

> Dataset: GSE165703 - CLIP1 peak across samples

Peak Plot