HIV Target gene Detail Information

> TNRC6A Gene Search Result


Gene Information
Gene Name TNRC6A
Gene ID 27327
Gene Full Name trinucleotide repeat containing adaptor 6A
Gene Alias CAGH26|FAME6|GW1|GW182|TNRC6
Transcripts ENSG00000090905
Virus HIV
Gene Type protein-coding
HPA Location Info Nucleoplasm, Golgi apparatus, Vesicles;
Membrane Info Disease related genes, Human disease related genes, Plasma proteins, Predicted intracellular proteins
Uniport_ID Q8NDV7
HGNC ID HGNC:11969
OMIM ID 610739
Summary This gene encodes a member of the trinucleotide repeat containing 6 protein family. The protein functions in post-transcriptional gene silencing through the RNA interference (RNAi) and microRNA pathways. The protein associates with messenger RNAs and Argonaute proteins in cytoplasmic bodies known as GW-bodies or P-bodies. Inhibiting expression of this gene delocalizes other GW-body proteins and impairs RNAi and microRNA-induced gene silencing. [provided by RefSeq, Jul 2008]
Target gene [TNRC6A] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
4000744 chr16 46 123 132 301 View
4001634 chr16 19 100 25 144 View
4001635 chr16 19 100 25 144 View
4001636 chr16 19 100 25 144 View
4001637 chr16 19 100 25 144 View
4005696 chr16 26 4 0 30 View
4006871 chr16 13 7 2 22 View
4007424 chr16 19 0 0 19 View
4009655 chr16 8 3 0 11 View

Target gene [TNRC6A] related to Omics data
Data ID Experiment type Sample number Platform
C
  GSE221688 		Chip-seq;scATAC-Seq;scRNA-Seq 12 Illumina NovaSeq 6000 (Homo sapiens)
GSE99737 RNA-seq 9 Illumina HiSeq 2500 (Homo sapiens)
GSE144332 RNA-seq 75 NextSeq 550 (Homo sapiens)
GSE157829 scRNA-seq 7 Illumina HiSeq 2500 (Homo sapiens)
C
  GSE165705 		Chip-seq 30 Illumina NovaSeq 6000 (Homo sapiens)
GSE164264 RNA-seq 6 BGISEQ-500 (Homo sapiens)
C
  GSE30738 		Chip-seq 2 Illumina Genome Analyzer II (Homo sapiens)
GSE262621 RNA-seq 70 Illumina NovaSeq 6000 (Homo sapiens)
GSE128121 RNA-seq 16 Illumina HiSeq 4000 (Homo sapiens)
GSE162914 RNA-seq 211 Illumina HiSeq 2500 (Homo sapiens)
GSE279982 Methylation profiling (Array) 576 Infinium MethylationEPIC
C
  GSE144329 		ATAC-seq 96 NextSeq 550 (Homo sapiens)
GSE205204 RNA-seq 14 Illumina NovaSeq 6000 (Homo sapiens)
GSE125686 RNA-seq 62 Illumina HiSeq 2000 (Homo sapiens);Illumina HiSeq 2500 (Homo sapiens);Illumina NextSeq 500 (Homo sapiens)
C
  GSE220859 		Chip-seq 11 Illumina NovaSeq 6000 (Homo sapiens)
GSE165708 RNA-seq 100 Illumina HiSeq 4000 (Homo sapiens)
C
  GSE211651 		Chip-seq;RNA-seq;PRO-seq 39 Illumina NextSeq 500 (Homo sapiens);Illumina NovaSeq 6000 (Homo sapiens)
GSE68028 MeDIP-chip 1 NimbleGen Human DNA Methylation 2.1M Deluxe Promoter Array [100929_HG19_Deluxe_Prom_Meth_HX1]
C
  GSE100376 		ATAC-seq 24 Illumina NextSeq 500 (Homo sapiens)
GSE167211 RNA-seq 1 Illumina HiSeq 2000 (Homo sapiens)
GSE165132 RNA-seq 56 NextSeq 550 (Homo sapiens)
GSE228078 scRNA-seq 12 Illumina NovaSeq 6000 (Homo sapiens)
C
  GSE100266 		ATAC-seq;Chip-seq;RNA-seq 32 Illumina HiSeq 2500 (Homo sapiens)
C
  GSE165703 		ATAC-seq 82 Illumina HiSeq 4000 (Homo sapiens)
GSE246082 RNA-seq 6 Illumina HiSeq 4000 (Homo sapiens)


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE221688 - TNRC6A peak across samples

Peak Plot

> Dataset: GSE165705 - TNRC6A peak across samples

Peak Plot

> Dataset: GSE30738 - TNRC6A peak across samples

Peak Plot

> Dataset: GSE144329 - TNRC6A peak across samples

Peak Plot

> Dataset: GSE220859 - TNRC6A peak across samples

Peak Plot

> Dataset: GSE211651 - TNRC6A peak across samples

Peak Plot

> Dataset: GSE100376 - TNRC6A peak across samples

Peak Plot

> Dataset: GSE100266 - TNRC6A peak across samples

Peak Plot

> Dataset: GSE165703 - TNRC6A peak across samples

Peak Plot