Overview of HIV Mutation, Integration-Cistrome Factor Overlap and Target gene

Human Immunodeficiency Virus (HIV) are two species of Lentivirus (a subgroup of retrovirus) that infect humans.Over time, they cause acquired immunodeficiency syndrome (AIDS), a condition in which progressive failure of the immune system allows life-threatening opportunistic infections and cancers to thrive.
Size: 9.8kb
Encoding: IN, PR, RT, CA, Env, Gag, gp120, gp41, Nef, Vpu, Vpr, Vif, Tat, Rev, etc.
Human Disease: Acquired Immunodeficiency Syndrome, etc.
Click the View button on the page to view detailed information.


HIV Mutation Info
Only show 100 info Click here to see all HIV Mutation Sites
ID PMID Mutation Gene/Protein/Region Encoding Gene/Protein Disease Description Detail
1 9874563 L64A
Vpr
Vpr
Acquired Immunodeficiency Syndrome
G
View
2 17958917 R19S
Tat
Tat
Acquired Immunodeficiency Syndrome
G
S
View
3 27231099 M184M
RT
gag-pol
Acquired Immunodeficiency Syndrome
G
S
C
L
View
4 17500586 Q58E
PR
gag-pol
HIV Infections
D
G
R
S
View
5 39420358 K70E
PR
gag-pol
HIV Infections
D
G
R
C
L
View
6 39420358 M184V
RT
gag-pol
HIV Infections
D
G
R
C
L
View
7 39420358 P225H
RT
gag-pol
HIV Infections
D
G
R
C
L
View
8 39420358 V108I
RT
gag-pol
HIV Infections
D
G
R
C
L
View
9 39420358 V179D
RT
gag-pol
HIV Infections
D
G
R
C
L
View
10 39420358 V179E
RT
gag-pol
HIV Infections
D
G
R
C
L
View
11 39420358 V179T
RT
gag-pol
HIV Infections
D
G
R
C
L
View
12 39420358 V82A
PR
gag-pol
HIV Infections
D
G
R
C
L
View
13 39420358 Y181C
RT
gag-pol
HIV Infections
D
G
R
C
L
View
14 39420358 Y181L
RT
gag-pol
HIV Infections
D
G
R
C
L
View
15 17500586 T215F
RT
gag-pol
HIV Infections
D
G
R
S
View
16 39431267 I54M
PR
gag-pol
HIV Infections
D
G
View
17 39431267 I84V
PR
gag-pol
HIV Infections
D
G
View
18 39459843 A364V
Gag
Gag
HIV Infections
D
G
View
19 39459930 D232N
IN
gag-pol
HIV Infections
D
G
S
C
L
View
20 39459930 E138K
IN
gag-pol
HIV Infections
D
G
S
C
L
View
21 39459930 E157Q
IN
gag-pol
HIV Infections
D
G
S
C
L
View
22 39459930 L74M
IN
gag-pol
HIV Infections
D
G
S
C
L
View
23 39459930 R263K
IN
gag-pol
HIV Infections
D
G
S
C
L
View
24 39459930 T97A
IN
gag-pol
HIV Infections
D
G
S
C
L
View
25 39459974 R77Q
Vpr
Vpr
HIV Infections
D
G
R
I
View
26 17500586 T215Y
RT
gag-pol
HIV Infections
D
G
R
S
View
27 39491355 A62V
RT
gag-pol
HIV Infections
D
G
C
L
View
28 39491355 E138K
IN
gag-pol
HIV Infections
D
G
C
L
View
29 39491355 E157Q
IN
gag-pol
HIV Infections
D
G
C
L
View
30 39491355 G140A
IN
gag-pol
HIV Infections
D
G
C
L
View
31 39491355 G140S
IN
gag-pol
HIV Infections
D
G
C
L
View
32 39491355 G190A
RT
gag-pol
HIV Infections
D
G
C
L
View
33 39491355 K56R
RT
gag-pol
HIV Infections
D
G
C
L
View
34 39491355 L90M
PR
gag-pol
HIV Infections
D
G
C
L
View
35 39491355 M184V
RT
gag-pol
HIV Infections
D
G
C
L
View
36 39491355 Q148H
IN
gag-pol
HIV Infections
D
G
C
L
View
37 17500586 T69D
RT
gag-pol
HIV Infections
D
G
R
S
View
38 39491355 Q148K
IN
gag-pol
HIV Infections
D
G
C
L
View
39 39491355 Q148R
IN
gag-pol
HIV Infections
D
G
C
L
View
40 39491355 R263K
IN
gag-pol
HIV Infections
D
G
C
L
View
41 39493858 A98G
RT
gag-pol
HIV Infections
D
G
S
C
L
View
42 39493858 D67G
RT
gag-pol
HIV Infections
D
G
S
C
L
View
43 39493858 D67N
RT
gag-pol
HIV Infections
D
G
S
C
L
View
44 39493858 E138A
RT
gag-pol
HIV Infections
D
G
S
C
L
View
45 39493858 E138G
RT
gag-pol
HIV Infections
D
G
S
C
L
View
46 39493858 E138K
RT
gag-pol
HIV Infections
D
G
S
C
L
View
47 39493858 F227L
RT
gag-pol
HIV Infections
D
G
S
C
L
View
48 17500586 T69N
RT
gag-pol
HIV Infections
D
G
R
S
View
49 39493858 G190A
RT
gag-pol
HIV Infections
D
G
S
C
L
View
50 39493858 G190E
RT
gag-pol
HIV Infections
D
G
S
C
L
View
51 39493858 G190S
RT
gag-pol
HIV Infections
D
G
S
C
L
View
52 39493858 K101E
RT
gag-pol
HIV Infections
D
G
S
C
L
View
53 39493858 K101H
RT
gag-pol
HIV Infections
D
G
S
C
L
View
54 39493858 K101P
RT
gag-pol
HIV Infections
D
G
S
C
L
View
55 39493858 K101Q
RT
gag-pol
HIV Infections
D
G
S
C
L
View
56 39493858 K101T
RT
gag-pol
HIV Infections
D
G
S
C
L
View
57 39493858 K103N
RT
gag-pol
HIV Infections
D
G
S
C
L
View
58 39493858 K103R
RT
gag-pol
HIV Infections
D
G
S
C
L
View
59 17500586 V118I
RT
gag-pol
HIV Infections
D
G
R
S
View
60 39493858 K103S
RT
gag-pol
HIV Infections
D
G
S
C
L
View
61 39493858 K20T
PR
gag-pol
HIV Infections
D
G
S
C
L
View
62 39493858 K65N
RT
gag-pol
HIV Infections
D
G
S
C
L
View
63 39493858 K65R
RT
gag-pol
HIV Infections
D
G
S
C
L
View
64 39493858 K70N
RT
gag-pol
HIV Infections
D
G
S
C
L
View
65 39493858 K70R
RT
gag-pol
HIV Infections
D
G
S
C
L
View
66 39493858 K70T
RT
gag-pol
HIV Infections
D
G
S
C
L
View
67 39493858 L10F
PR
gag-pol
HIV Infections
D
G
S
C
L
View
68 39493858 L210W
RT
gag-pol
HIV Infections
D
G
S
C
L
View
69 39493858 L74I
RT
gag-pol
HIV Infections
D
G
S
C
L
View
70 17500586 V32I
PR
gag-pol
HIV Infections
D
G
R
S
View
71 39493858 M184I
RT
gag-pol
HIV Infections
D
G
S
C
L
View
72 39493858 M184V
RT
gag-pol
HIV Infections
D
G
S
C
L
View
73 39493858 M41L
RT
gag-pol
HIV Infections
D
G
S
C
L
View
74 39493858 M46I
PR
gag-pol
HIV Infections
D
G
S
C
L
View
75 39493858 M46L
PR
gag-pol
HIV Infections
D
G
S
C
L
View
76 39493858 N88S
PR
gag-pol
HIV Infections
D
G
S
C
L
View
77 39493858 P225H
RT
gag-pol
HIV Infections
D
G
S
C
L
View
78 39493858 Q58E
PR
gag-pol
HIV Infections
D
G
S
C
L
View
79 39493858 T215A
RT
gag-pol
HIV Infections
D
G
S
C
L
View
80 39493858 T215D
RT
gag-pol
HIV Infections
D
G
S
C
L
View
81 17500586 V75I
RT
gag-pol
HIV Infections
D
G
R
S
View
82 39493858 T215I
RT
gag-pol
HIV Infections
D
G
S
C
L
View
83 39493858 T215N
RT
gag-pol
HIV Infections
D
G
S
C
L
View
84 39493858 T215S
RT
gag-pol
HIV Infections
D
G
S
C
L
View
85 39493858 T74P
PR
gag-pol
HIV Infections
D
G
S
C
L
View
86 39493858 V106I
RT
gag-pol
HIV Infections
D
G
S
C
L
View
87 39493858 V106M
RT
gag-pol
HIV Infections
D
G
S
C
L
View
88 39493858 V108I
RT
gag-pol
HIV Infections
D
G
S
C
L
View
89 39493858 V179D
RT
gag-pol
HIV Infections
D
G
S
C
L
View
90 39493858 V179I
RT
gag-pol
HIV Infections
D
G
S
C
L
View
91 39493858 V179L
RT
gag-pol
HIV Infections
D
G
S
C
L
View
92 17500586 V75M
RT
gag-pol
HIV Infections
D
G
R
S
View
93 39493858 Y115F
RT
gag-pol
HIV Infections
D
G
S
C
L
View
94 39493858 Y181C
RT
gag-pol
HIV Infections
D
G
S
C
L
View
95 39493858 Y188L
RT
gag-pol
HIV Infections
D
G
S
C
L
View
96 39512940 E138A
RT
gag-pol
HIV Infections
D
G
C
L
View
97 39512940 E138K
IN
gag-pol
HIV Infections
D
G
C
L
View
98 39512940 E92G
IN
gag-pol
HIV Infections
D
G
C
L
View
99 39512940 E92Q
IN
gag-pol
HIV Infections
D
G
C
L
View
100 39512940 G118R
IN
gag-pol
HIV Infections
D
G
C
L
View
Contents
Description

The table shows all curated mutation sites of HIV in each literature

Table Description Column Note
D
The study mentioned a certain treatment method, such as drug resistance caused by mutations.
G
The study mentioned the virus genotype/subtype information.
R
The study mentioned the reference sequence used for comparison, or the original strain of the virus used for site-directed mutagenesis.
S
The study provided sequence information or accession numbers.
L
The study provided the geographic region/country of data origin.
C
The study provided clinical baseline information.
I
The study involved information related to immune.
T
The study involved host target genes.

HIV Overlap Info between Viral Integration Fragments and Cistrome Factors
Only show 100 info Click here to see all HIV Integration Sites
DVID Chromosome Histone Modification Transcription Factor Binding Site Chromatin Accessibility Sum of Overlapped Records Detail
4017131 chr1 8839 10516 2052 21407 View
4000003 chr1 1945 2399 1988 6332 View
4017148 chr1 3317 1850 1137 6304 View
4000024 chr1 2302 115 5 2422 View
4000044 chr1 1187 134 359 1680 View
4000049 chr1 1078 96 442 1616 View
4000072 chr1 1205 97 13 1315 View
4000079 chr1 430 382 448 1260 View
4000088 chr1 1162 11
0
1173 View
4000090 chr1 119 473 573 1165 View
4000094 chr1 932 66 146 1144 View
4000122 chr1 763 75 151 989 View
4000141 chr1 237 322 356 915 View
4000143 chr1 882 18
0
900 View
4000152 chr1 792 58 21 871 View
4000153 chr1 700 81 84 865 View
4000155 chr1 855 5 2 862 View
4000179 chr1 664 101 46 811 View
4000196 chr1 75 432 253 760 View
4000199 chr1 594 67 94 755 View
4000201 chr1 498 132 122 752 View
4000231 chr1 106 505 73 684 View
4000245 chr1 560 18 73 651 View
4000246 chr1 33 271 347 651 View
4000255 chr1 430 123 84 637 View
4000259 chr1 252 205 176 633 View
4000262 chr1 202 280 144 626 View
4000284 chr1 7 489 96 592 View
4000291 chr1 170 322 89 581 View
4000295 chr1 190 208 177 575 View
4000305 chr1 334 149 78 561 View
4000329 chr1 409 66 55 530 View
4000333 chr1 231 174 124 529 View
4000360 chr1 477 33 8 518 View
4000363 chr1 259 98 158 515 View
4000385 chr1 347 97 54 498 View
4000414 chr1 11 426 45 482 View
4000426 chr1 170 140 161 471 View
4000438 chr1 449 11 3 463 View
4000452 chr1 257 125 72 454 View
4000461 chr1 409 31 7 447 View
4000472 chr1 392 31 15 438 View
4000488 chr1 410 9 10 429 View
4000504 chr1 379 29 8 416 View
4000513 chr1 172 56 179 407 View
4000514 chr1 321 66 20 407 View
4000518 chr1 59 129 216 404 View
4000534 chr1 318 48 23 389 View
4000549 chr1 121 74 192 387 View
4000556 chr1 254 51 68 373 View
4000570 chr1 228 123 14 365 View
4000577 chr1 329 33 1 363 View
4000595 chr1 144 39 176 359 View
4000608 chr1 327 14 3 344 View
4000609 chr1 237 23 83 343 View
4000618 chr1 44 277 20 341 View
4000639 chr1 317 18
0
335 View
4000653 chr1 5 230 96 331 View
4000659 chr1 313 14 1 328 View
4000688 chr1 191 47 79 317 View
4000693 chr1 108 80 127 315 View
4000695 chr1 81 155 78 314 View
4000709 chr1 291 16 2 309 View
4000714 chr1 178 32 97 307 View
4000722 chr1 142 148 13 303 View
4000734 chr1 102 136 61 299 View
4017147 chr1 83 122 85 290 View
4000765 chr1 177 35 75 287 View
4000788 chr1 123 146 15 284 View
4000781 chr1 58 103 122 283 View
4000784 chr1 270 13
0
283 View
4000807 chr1 77 61 138 276 View
4000808 chr1 75 101 99 275 View
4000824 chr1 143 93 36 272 View
4000837 chr1 265 3
0
268 View
4000842 chr1 29 221 17 267 View
4000869 chr1 190 37 34 261 View
4000872 chr1 44 92 124 260 View
4000877 chr1 246 8 3 257 View
4000879 chr1 194 54 8 256 View
4000898 chr1 222 31
0
253 View
4000900 chr1 231 21 1 253 View
4000901 chr1 168 73 12 253 View
4000913 chr1 192 40 19 251 View
4000905 chr1 234 11 5 250 View
4000938 chr1 67 82 96 245 View
4000941 chr1 61 88 94 243 View
4000942 chr1 41 140 61 242 View
4000946 chr1 9 215 17 241 View
4000967 chr1 4 47 186 237 View
4000971 chr1 207 11 19 237 View
4000975 chr1 127 62 47 236 View
4000985 chr1 181 50 1 232 View
4000986 chr1 94 40 98 232 View
4000994 chr1 144 80 6 230 View
4001005 chr1 11 130 89 230 View
4001010 chr1 115 81 33 229 View
4001026 chr1 145 43 40 228 View
4001053 chr1 92 51 81 224 View
4001069 chr1 38 163 20 221 View

Click to see histogram of VIS-Factor Overlap by chromosome of HIV

Click to see the overlap count of three factors and HIV intergration fragments on the human chromosomes


HIV Target Gene Info
Only show 100 info Click here to see all HIV Target Gene
ID Target gene Virus Impact Literature Count Description Detail
1 A1BG HIV
I
1
E
S
C
M
View
2 A2M HIV
I
1
E
S
C
M
View
3 A2ML1 HIV
I
1
E
C
M
View
4 AAAS HIV
I
1
E
S
C
M
View
5 AACS HIV
I
1
E
C
M
View
6 AAK1 HIV
I
4
E
S
C
M
View
7 AASDH HIV
I
1
E
C
M
View
8 AASDHPPT HIV
I
2
E
S
C
M
View
9 AASS HIV
I
1
E
C
M
View
10 AATF HIV
I
3
E
S
C
M
View
11 ABCA11P HIV
I
4
E
C
M
View
12 ABCA13 HIV
I
1
E
C
M
View
13 ABCA2 HIV
I
1
E
S
C
M
View
14 ABCA3 HIV
I
1
E
C
M
View
15 ABCA5 HIV
I
1
E
S
C
M
View
16 ABCA7 HIV
I
2
E
C
M
View
17 ABCB11 HIV
I
1
E
C
M
View
18 ABCB7 HIV
I
1
E
S
C
M
View
19 ABCC1 HIV
I
1
E
S
C
M
View
20 ABCC5 HIV
I
2
E
C
M
View
21 ABCD2 HIV
I
2
E
S
C
M
View
22 ABCE1 HIV
I
1
E
S
C
M
View
23 ABCF1 HIV
I
3
E
S
C
M
View
24 ABHD12 HIV
I
1
E
S
C
M
View
25 ABHD13 HIV
I
1
E
S
C
M
View
26 ABHD16A HIV
I
1
E
S
C
M
View
27 ABI1 HIV
I
1
E
S
C
M
View
28 ABL1 HIV
I
2
E
C
M
View
29 ABLIM1 HIV
I
3
E
S
C
M
View
30 ABR HIV
I
1
E
S
C
M
View
31 ABTB3 HIV
I
1
E
C
M
View
32 ACAA2 HIV
I
1
E
S
C
M
View
33 ACACA HIV
I
2
E
C
M
View
34 ACAD10 HIV
I
1
E
S
C
M
View
35 ACAD9 HIV
I
1
E
C
M
View
36 ACADM HIV
I
1
E
S
C
M
View
37 ACAP2 HIV
I
2
E
S
C
M
View
38 ACBD3 HIV
I
1
E
S
C
M
View
39 ACBD5 HIV
I
1
E
S
C
M
View
40 ACBD6 HIV
I
1
E
S
C
M
View
41 ACER3 HIV
I
1
E
S
C
M
View
42 ACIN1 HIV
I
2
E
S
C
M
View
43 ACKR2 HIV
I
1
E
C
M
View
44 ACOT7 HIV
I
2
E
S
C
M
View
45 ACOX1 HIV
I
2
E
S
C
M
View
46 ACP1 HIV
I
1
E
S
C
M
View
47 ACSF3 HIV
I
3
E
S
C
M
View
48 ACSL3 HIV
I
1
E
S
C
M
View
49 ACTN4 HIV
I
1
E
S
C
M
View
50 ACTR3 HIV
I
2
E
S
C
M
View
51 ACTR3B HIV
I
1
E
S
C
M
View
52 ACTR3C HIV
I
2
E
C
M
View
53 ACVR1B HIV
I
1
E
S
C
M
View
54 ACVR1C HIV
I
1
E
S
C
M
View
55 ACYP1 HIV
I
1
E
S
C
M
View
56 ADA HIV
I
1
E
S
C
M
View
57 ADA2 HIV
I
1
E
S
C
M
View
58 ADAM10 HIV
I
2
E
S
C
M
View
59 ADAM22 HIV
I
2
E
C
M
View
60 ADAM23 HIV
I
1
E
C
M
View
61 ADAM8 HIV
I
1
E
S
C
M
View
62 ADAMTS18 HIV
I
1
E
S
C
M
View
63 ADAMTS19 HIV
I
1
E
C
M
View
64 ADAMTS9-AS2 HIV
I
1
E
C
M
View
65 ADAMTSL1 HIV
I
1
E
C
M
View
66 ADAMTSL3 HIV
I
1
E
C
M
View
67 ADAR HIV
I
1
E
S
C
M
View
68 ADARB1 HIV
I
1
E
S
C
M
View
69 ADAT3 HIV
I
3
E
C
M
View
70 ADCK1 HIV
I
1
E
S
C
M
View
71 ADCK5 HIV
I
2
E
C
M
View
72 ADCY1 HIV
I
1
E
C
M
View
73 ADCY9 HIV
I
2
E
S
C
M
View
74 ADD1 HIV
I
1
E
S
C
M
View
75 ADD3 HIV
I
2
E
S
C
M
View
76 ADGRB3 HIV
I
1
E
C
M
View
77 ADGRE1 HIV
I
1
E
S
C
M
View
78 ADGRE4P HIV
I
1
E
C
M
View
79 ADGRE5 HIV
I
1
E
S
C
M
View
80 ADGRV1 HIV
I
1
E
C
M
View
81 ADIPOR2 HIV
I
1
E
S
C
M
View
82 ADK HIV
I
4
E
S
C
M
View
83 ADNP HIV
I
2
E
C
M
View
84 ADNP-AS1 HIV
I
1
E
C
M
View
85 ADNP2 HIV
I
1
E
S
C
M
View
86 ADORA2A-AS1 HIV
I
1
E
C
M
View
87 ADPRM HIV
I
1
E
S
C
M
View
88 ADSL HIV
I
1
E
S
C
M
View
89 ADSS2 HIV
I
1
E
C
M
View
90 ADTRP HIV
I
1
E
S
C
M
View
91 AEBP2 HIV
I
2
E
S
C
M
View
92 AFDN HIV
I
1
E
S
C
M
View
93 AFF1 HIV
I
1
E
S
C
M
View
94 AFF3 HIV
I
1
E
S
C
M
View
95 AFF4 HIV
I
1
E
S
C
M
View
96 AFG2A HIV
I
1
E
C
View
97 AFG3L1P HIV
I
1
E
C
M
View
98 AGA-DT HIV
I
1
E
C
View
99 AGBL3 HIV
I
1
E
C
M
View
100 AGBL4 HIV
I
1
E
C
M
View
Contents Description and
Data Download
Table Note
I
Target gene is affected by virus integration.
M
Target gene is associated with the virus gene/protein/region.
E
Target gene is detected in the expression profiling data.
S
Target gene is detected in the single-cell transcriptome data.
C
Target gene is detected in the genome binding/occupancy profiling data.
M
Target gene is detected in the methylation profiling data.
F
Target gene provides figures to visualize the analysis results.
F indicates that this gene has visualization results on at least one type of sequencing data.