HIV Target gene Detail Information

> NFATC3 Gene Search Result


Gene Information
Gene Name NFATC3
Gene ID 4775
Gene Full Name nuclear factor of activated T cells 3
Gene Alias NF-AT4c|NFAT4|NFATX|n339260
Transcripts ENSG00000072736
Virus HIV
Gene Type protein-coding
HPA Location Info Nucleoplasm, Cytosol;
Membrane Info Predicted intracellular proteins, Transcription factors
Uniport_ID Q12968
HGNC ID HGNC:7777
OMIM ID 602698
Summary The product of this gene is a member of the nuclear factors of activated T cells DNA-binding transcription complex. This complex consists of at least two components: a preexisting cytosolic component that translocates to the nucleus upon T cell receptor (TCR) stimulation and an inducible nuclear component. Other members of this family participate to form this complex also. The product of this gene plays a role in the regulation of gene expression in T cells and immature thymocytes. Several transcript variants encoding distinct isoforms have been identified for this gene. [provided by RefSeq, Nov 2010]
Target gene [NFATC3] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
4000469 chr16 14 35 391 440 View
4000636 chr16 304 14 18 336 View
4000852 chr16 210 20 35 265 View
4001272 chr16 176 5 3 184 View
4001614 chr16 139 7 0 146 View
4001673 chr16 36 95 11 142 View
4002118 chr16 71 20 20 111 View
4002223 chr16 23 46 36 105 View
4002487 chr16 28 52 12 92 View
4002601 chr16 79 8 0 87 View
4002615 chr16 79 8 0 87 View
4003142 chr16 19 31 18 68 View
4003562 chr16 23 23 13 59 View
4004389 chr16 23 4 18 45 View
4005270 chr16 15 18 1 34 View
4005271 chr16 4 30 0 34 View
4005355 chr16 29 4 0 33 View
4005455 chr16 2 30 0 32 View
4005824 chr16 7 22 0 29 View
4005844 chr16 3 10 16 29 View
4006230 chr16 17 8 1 26 View
4006330 chr16 3 22 0 25 View
4006331 chr16 25 0 0 25 View
4006448 chr16 19 3 3 25 View
4006604 chr16 22 2 0 24 View
4006605 chr16 22 2 0 24 View
4006638 chr16 23 0 0 23 View
4006742 chr16 13 5 5 23 View
4007553 chr16 18 1 0 19 View
4008229 chr16 16 0 0 16 View
4008336 chr16 14 1 0 15 View
4009377 chr16 12 0 0 12 View
4009658 chr16 8 3 0 11 View
4010039 chr16 3 5 2 10 View
4010196 chr16 6 3 0 9 View
4010197 chr16 7 2 0 9 View
4011831 chr16 2 4 0 6 View
4012247 chr16 0 5 0 5 View
4012725 chr16 4 0 0 4 View
4013619 chr16 3 0 0 3 View
4014152 chr16 1 1 0 2 View
4014704 chr16 1 1 0 2 View
4014705 chr16 2 0 0 2 View
4015053 chr16 1 0 0 1 View
4015518 chr16 1 0 0 1 View
4015624 chr16 1 0 0 1 View
4016606 chr16 0 0 0 0 View
4016807 chr16 5 1 0 6 View

Target gene [NFATC3] related to Omics data
Data ID Experiment type Sample number Platform
C
  GSE221688 		Chip-seq;scATAC-Seq;scRNA-Seq 12 Illumina NovaSeq 6000 (Homo sapiens)
GSE99737 RNA-seq 9 Illumina HiSeq 2500 (Homo sapiens)
GSE144332 RNA-seq 75 NextSeq 550 (Homo sapiens)
GSE157829 scRNA-seq 7 Illumina HiSeq 2500 (Homo sapiens)
C
  GSE165705 		Chip-seq 30 Illumina NovaSeq 6000 (Homo sapiens)
GSE164264 RNA-seq 6 BGISEQ-500 (Homo sapiens)
C
  GSE30738 		Chip-seq 2 Illumina Genome Analyzer II (Homo sapiens)
GSE262621 RNA-seq 70 Illumina NovaSeq 6000 (Homo sapiens)
GSE202410 scRNA-seq 24 Illumina HiSeq 4000 (Homo sapiens)
GSE128121 RNA-seq 16 Illumina HiSeq 4000 (Homo sapiens)
GSE162914 RNA-seq 211 Illumina HiSeq 2500 (Homo sapiens)
GSE279982 Methylation profiling (Array) 576 Infinium MethylationEPIC
C
  GSE144329 		ATAC-seq 96 NextSeq 550 (Homo sapiens)
GSE205204 RNA-seq 14 Illumina NovaSeq 6000 (Homo sapiens)
GSE125686 RNA-seq 62 Illumina HiSeq 2000 (Homo sapiens);Illumina HiSeq 2500 (Homo sapiens);Illumina NextSeq 500 (Homo sapiens)
S
  GSE198339 		scRNA-seq 8 Illumina NovaSeq 6000 (Homo sapiens)
GSE233747 scRNA-seq 40 Illumina NovaSeq 6000 (Homo sapiens)
C
  GSE220859 		Chip-seq 11 Illumina NovaSeq 6000 (Homo sapiens)
GSE165708 RNA-seq 100 Illumina HiSeq 4000 (Homo sapiens)
C
  GSE211651 		Chip-seq;RNA-seq;PRO-seq 39 Illumina NextSeq 500 (Homo sapiens);Illumina NovaSeq 6000 (Homo sapiens)
C
  GSE100376 		ATAC-seq 24 Illumina NextSeq 500 (Homo sapiens)
GSE167211 RNA-seq 1 Illumina HiSeq 2000 (Homo sapiens)
GSE165132 RNA-seq 56 NextSeq 550 (Homo sapiens)
GSE228078 scRNA-seq 12 Illumina NovaSeq 6000 (Homo sapiens)
C
  GSE100266 		ATAC-seq;Chip-seq;RNA-seq 32 Illumina HiSeq 2500 (Homo sapiens)
C
  GSE165703 		ATAC-seq 82 Illumina HiSeq 4000 (Homo sapiens)
GSE148796 scRNA-seq 4 Illumina NextSeq 500 (Homo sapiens)
GSE246082 RNA-seq 6 Illumina HiSeq 4000 (Homo sapiens)


When the query gene is differentially changed in the dataset, a feature/violin plot will be displayed.


> Dataset: GSE198339 - Gene expression in cell subsets