HIV Target gene Detail Information

> RERE Gene Search Result


Gene Information
Gene Name RERE
Gene ID 473
Gene Full Name arginine-glutamic acid dipeptide repeats
Gene Alias ARG|ARP|ATN1L|DNB1|NEDBEH
Transcripts ENSG00000142599
Virus HIV
Gene Type protein-coding
HPA Location Info Nuclear bodies;Nucleoplasm;
Membrane Info Disease related genes, Human disease related genes, Predicted intracellular proteins, Transcription factors
Uniport_ID Q9P2R6
HGNC ID HGNC:9965
OMIM ID 605226
Summary This gene encodes a member of the atrophin family of arginine-glutamic acid (RE) dipeptide repeat-containing proteins. The encoded protein co-localizes with a transcription factor in the nucleus, and its overexpression triggers apoptosis. A similar protein in mouse associates with histone deacetylase and is thought to function as a transcriptional co-repressor during embryonic development. Multiple transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Jul 2008]
Target gene [RERE] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
4000049 chr1 1078 96 442 1616 View
4000363 chr1 259 98 158 515 View
4000488 chr1 410 9 10 429 View
4000941 chr1 61 88 94 243 View
4001504 chr1 103 21 32 156 View
4002011 chr1 46 65 7 118 View
4002731 chr1 63 8 11 82 View
4003651 chr1 47 8 1 56 View
4004036 chr1 11 33 6 50 View
4004178 chr1 33 11 4 48 View
4004429 chr1 17 18 9 44 View
4004574 chr1 1 33 8 42 View
4005216 chr1 29 6 0 35 View
4005545 chr1 24 6 1 31 View
4006428 chr1 15 8 2 25 View
4006475 chr1 14 10 0 24 View
4006476 chr1 23 1 0 24 View
4008116 chr1 5 6 5 16 View
4008215 chr1 12 3 1 16 View
4009791 chr1 9 0 1 10 View
4009792 chr1 9 1 0 10 View
4010231 chr1 9 0 0 9 View
4010642 chr1 1 5 2 8 View
4011967 chr1 5 1 0 6 View
4012823 chr1 3 1 0 4 View
4014653 chr1 2 0 0 2 View
4016827 chr1 34 1 2 37 View

Target gene [RERE] related to Omics data
Data ID Experiment type Sample number Platform
C
  GSE221688 		Chip-seq;scATAC-Seq;scRNA-Seq 12 Illumina NovaSeq 6000 (Homo sapiens)
GSE99737 RNA-seq 9 Illumina HiSeq 2500 (Homo sapiens)
GSE144332 RNA-seq 75 NextSeq 550 (Homo sapiens)
GSE157829 scRNA-seq 7 Illumina HiSeq 2500 (Homo sapiens)
C
  GSE165705 		Chip-seq 30 Illumina NovaSeq 6000 (Homo sapiens)
GSE164264 RNA-seq 6 BGISEQ-500 (Homo sapiens)
C
  GSE30738 		Chip-seq 2 Illumina Genome Analyzer II (Homo sapiens)
GSE262621 RNA-seq 70 Illumina NovaSeq 6000 (Homo sapiens)
GSE128121 RNA-seq 16 Illumina HiSeq 4000 (Homo sapiens)
GSE162914 RNA-seq 211 Illumina HiSeq 2500 (Homo sapiens)
GSE187515 scRNA-seq 104 Illumina MiSeq (Homo sapiens);Illumina HiSeq 4000 (Homo sapiens);Illumina NovaSeq 6000 (Homo sapiens)
GSE279982 Methylation profiling (Array) 576 Infinium MethylationEPIC
C
  GSE144329 		ATAC-seq 96 NextSeq 550 (Homo sapiens)
GSE205204 RNA-seq 14 Illumina NovaSeq 6000 (Homo sapiens)
GSE125686 RNA-seq 62 Illumina HiSeq 2000 (Homo sapiens);Illumina HiSeq 2500 (Homo sapiens);Illumina NextSeq 500 (Homo sapiens)
GSE198339 scRNA-seq 8 Illumina NovaSeq 6000 (Homo sapiens)
GSE233747 scRNA-seq 40 Illumina NovaSeq 6000 (Homo sapiens)
C
  GSE220859 		Chip-seq 11 Illumina NovaSeq 6000 (Homo sapiens)
GSE165708 RNA-seq 100 Illumina HiSeq 4000 (Homo sapiens)
C
  GSE211651 		Chip-seq;RNA-seq;PRO-seq 39 Illumina NextSeq 500 (Homo sapiens);Illumina NovaSeq 6000 (Homo sapiens)
GSE198809 scRNA-seq 46 Illumina NovaSeq 6000 (Homo sapiens)
GSE68028 MeDIP-chip 1 NimbleGen Human DNA Methylation 2.1M Deluxe Promoter Array [100929_HG19_Deluxe_Prom_Meth_HX1]
C
  GSE100376 		ATAC-seq 24 Illumina NextSeq 500 (Homo sapiens)
GSE167211 RNA-seq 1 Illumina HiSeq 2000 (Homo sapiens)
GSE165132 RNA-seq 56 NextSeq 550 (Homo sapiens)
GSE228078 scRNA-seq 12 Illumina NovaSeq 6000 (Homo sapiens)
C
  GSE100266 		ATAC-seq;Chip-seq;RNA-seq 32 Illumina HiSeq 2500 (Homo sapiens)
C
  GSE165703 		ATAC-seq 82 Illumina HiSeq 4000 (Homo sapiens)
GSE246082 RNA-seq 6 Illumina HiSeq 4000 (Homo sapiens)


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE221688 - RERE peak across samples

Peak Plot

> Dataset: GSE165705 - RERE peak across samples

Peak Plot

> Dataset: GSE30738 - RERE peak across samples

Peak Plot

> Dataset: GSE144329 - RERE peak across samples

Peak Plot

> Dataset: GSE220859 - RERE peak across samples

Peak Plot

> Dataset: GSE211651 - RERE peak across samples

Peak Plot

> Dataset: GSE100376 - RERE peak across samples

Peak Plot

> Dataset: GSE100266 - RERE peak across samples

Peak Plot

> Dataset: GSE165703 - RERE peak across samples

Peak Plot