HIV Target gene Detail Information

> GNB1 Gene Search Result


Gene Information
Gene Name GNB1
Gene ID 2782
Gene Full Name G protein subunit beta 1
Gene Alias HG2A|MDS|MRD42
Transcripts ENSG00000078369
Virus HIV
Gene Type protein-coding
HPA Location Info Plasma membrane;Golgi apparatus;
Membrane Info Cancer-related genes, Disease related genes, Human disease related genes, Plasma proteins, Potential drug targets, Predicted intracellular proteins, RAS pathway related proteins, Transporters
Uniport_ID P62873
HGNC ID HGNC:4396
OMIM ID 139380
Summary Heterotrimeric guanine nucleotide-binding proteins (G proteins), which integrate signals between receptors and effector proteins, are composed of an alpha, a beta, and a gamma subunit. These subunits are encoded by families of related genes. This gene encodes a beta subunit. Beta subunits are important regulators of alpha subunits, as well as of certain signal transduction receptors and effectors. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Sep 2013]
Target gene [GNB1] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
4000709 chr1 291 16 2 309 View
4000946 chr1 9 215 17 241 View
4001010 chr1 115 81 33 229 View
4001339 chr1 170 6 0 176 View
4001540 chr1 123 13 17 153 View
4001705 chr1 127 9 2 138 View
4002744 chr1 63 1 17 81 View
4002933 chr1 73 2 0 75 View
4003706 chr1 30 11 15 56 View
4004636 chr1 34 7 0 41 View
4004858 chr1 36 2 0 38 View
4005126 chr1 20 15 0 35 View
4006211 chr1 19 7 0 26 View
4006212 chr1 9 14 3 26 View
4007226 chr1 20 0 0 20 View
4007289 chr1 8 9 3 20 View
4007388 chr1 18 1 0 19 View
4008376 chr1 14 1 0 15 View
4009356 chr1 10 2 0 12 View
4009429 chr1 9 0 2 11 View
4011302 chr1 7 0 0 7 View

Target gene [GNB1] related to Omics data
Data ID Experiment type Sample number Platform
C
  GSE221688 		Chip-seq;scATAC-Seq;scRNA-Seq 12 Illumina NovaSeq 6000 (Homo sapiens)
GSE99737 RNA-seq 9 Illumina HiSeq 2500 (Homo sapiens)
GSE144332 RNA-seq 75 NextSeq 550 (Homo sapiens)
GSE157829 scRNA-seq 7 Illumina HiSeq 2500 (Homo sapiens)
C
  GSE165705 		Chip-seq 30 Illumina NovaSeq 6000 (Homo sapiens)
GSE164264 RNA-seq 6 BGISEQ-500 (Homo sapiens)
GSE262621 RNA-seq 70 Illumina NovaSeq 6000 (Homo sapiens)
GSE202410 scRNA-seq 24 Illumina HiSeq 4000 (Homo sapiens)
GSE128121 RNA-seq 16 Illumina HiSeq 4000 (Homo sapiens)
GSE162914 RNA-seq 211 Illumina HiSeq 2500 (Homo sapiens)
GSE187515 scRNA-seq 104 Illumina MiSeq (Homo sapiens);Illumina HiSeq 4000 (Homo sapiens);Illumina NovaSeq 6000 (Homo sapiens)
GSE279982 Methylation profiling (Array) 576 Infinium MethylationEPIC
C
  GSE144329 		ATAC-seq 96 NextSeq 550 (Homo sapiens)
GSE205204 RNA-seq 14 Illumina NovaSeq 6000 (Homo sapiens)
GSE125686 RNA-seq 62 Illumina HiSeq 2000 (Homo sapiens);Illumina HiSeq 2500 (Homo sapiens);Illumina NextSeq 500 (Homo sapiens)
GSE198339 scRNA-seq 8 Illumina NovaSeq 6000 (Homo sapiens)
GSE233747 scRNA-seq 40 Illumina NovaSeq 6000 (Homo sapiens)
C
  GSE220859 		Chip-seq 11 Illumina NovaSeq 6000 (Homo sapiens)
GSE165708 RNA-seq 100 Illumina HiSeq 4000 (Homo sapiens)
C
  GSE211651 		Chip-seq;RNA-seq;PRO-seq 39 Illumina NextSeq 500 (Homo sapiens);Illumina NovaSeq 6000 (Homo sapiens)
GSE198809 scRNA-seq 46 Illumina NovaSeq 6000 (Homo sapiens)
GSE68028 MeDIP-chip 1 NimbleGen Human DNA Methylation 2.1M Deluxe Promoter Array [100929_HG19_Deluxe_Prom_Meth_HX1]
C
  GSE100376 		ATAC-seq 24 Illumina NextSeq 500 (Homo sapiens)
GSE167211 RNA-seq 1 Illumina HiSeq 2000 (Homo sapiens)
GSE165132 RNA-seq 56 NextSeq 550 (Homo sapiens)
GSE228078 scRNA-seq 12 Illumina NovaSeq 6000 (Homo sapiens)
C
  GSE100266 		ATAC-seq;Chip-seq;RNA-seq 32 Illumina HiSeq 2500 (Homo sapiens)
C
  GSE165703 		ATAC-seq 82 Illumina HiSeq 4000 (Homo sapiens)
GSE148796 scRNA-seq 4 Illumina NextSeq 500 (Homo sapiens)
GSE246082 RNA-seq 6 Illumina HiSeq 4000 (Homo sapiens)


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE221688 - GNB1 peak across samples

Peak Plot

> Dataset: GSE165705 - GNB1 peak across samples

Peak Plot

> Dataset: GSE144329 - GNB1 peak across samples

Peak Plot

> Dataset: GSE220859 - GNB1 peak across samples

Peak Plot

> Dataset: GSE211651 - GNB1 peak across samples

Peak Plot

> Dataset: GSE100376 - GNB1 peak across samples

Peak Plot

> Dataset: GSE100266 - GNB1 peak across samples

Peak Plot

> Dataset: GSE165703 - GNB1 peak across samples

Peak Plot