HIV Target gene Detail Information

> FCHSD2 Gene Search Result


Gene Information
Gene Name FCHSD2
Gene ID 9873
Gene Full Name FCH and double SH3 domains 2
Gene Alias NWK|NWK1|SH3MD3
Transcripts ENSG00000137478
Virus HIV
Gene Type protein-coding
HPA Location Info Plasma membrane, Actin filaments;Nuclear speckles, Focal adhesion sites;
Membrane Info Predicted intracellular proteins
Uniport_ID O94868
HGNC ID HGNC:29114
OMIM ID 617556
Summary Enables phosphatidylinositol-3,4,5-trisphosphate binding activity and phosphatidylinositol-3,4-bisphosphate binding activity. Involved in clathrin-dependent endocytosis and positive regulation of Arp2/3 complex-mediated actin nucleation. Located in clathrin-coated pit and plasma membrane. [provided by Alliance of Genome Resources, Apr 2025]
Target gene [FCHSD2] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
4000260 chr11 516 83 29 628 View
4001157 chr11 143 60 1 204 View
4001484 chr11 111 19 29 159 View
4001745 chr11 32 7 96 135 View
4002553 chr11 13 74 2 89 View
4002627 chr11 24 13 49 86 View
4004254 chr11 26 20 1 47 View
4004695 chr11 32 2 6 40 View
4004945 chr11 33 4 0 37 View
4005159 chr11 20 14 1 35 View
4005351 chr11 7 2 24 33 View
4005515 chr11 29 3 0 32 View
4005661 chr11 12 1 17 30 View
4006506 chr11 23 1 0 24 View
4006777 chr11 21 2 0 23 View
4006794 chr11 17 5 0 22 View
4007396 chr11 15 0 4 19 View
4007397 chr11 13 6 0 19 View
4007725 chr11 18 0 0 18 View
4007941 chr11 16 1 0 17 View
4009065 chr11 5 8 0 13 View
4009129 chr11 9 3 0 12 View
4009366 chr11 10 0 2 12 View
4009399 chr11 3 8 0 11 View
4010547 chr11 6 1 1 8 View
4011179 chr11 1 3 3 7 View
4012391 chr11 4 1 0 5 View
4012864 chr11 3 1 0 4 View
4012865 chr11 4 0 0 4 View
4013567 chr11 1 1 1 3 View
4013842 chr11 3 0 0 3 View
4013843 chr11 1 2 0 3 View
4016072 chr11 0 0 0 0 View
4016171 chr11 0 0 0 0 View
4016172 chr11 0 0 0 0 View

Target gene [FCHSD2] related to Omics data
Data ID Experiment type Sample number Platform
C
  GSE221688 		Chip-seq;scATAC-Seq;scRNA-Seq 12 Illumina NovaSeq 6000 (Homo sapiens)
GSE99737 RNA-seq 9 Illumina HiSeq 2500 (Homo sapiens)
GSE144332 RNA-seq 75 NextSeq 550 (Homo sapiens)
GSE157829 scRNA-seq 7 Illumina HiSeq 2500 (Homo sapiens)
C
  GSE165705 		Chip-seq 30 Illumina NovaSeq 6000 (Homo sapiens)
GSE164264 RNA-seq 6 BGISEQ-500 (Homo sapiens)
C
  GSE30738 		Chip-seq 2 Illumina Genome Analyzer II (Homo sapiens)
GSE262621 RNA-seq 70 Illumina NovaSeq 6000 (Homo sapiens)
GSE202410 scRNA-seq 24 Illumina HiSeq 4000 (Homo sapiens)
GSE128121 RNA-seq 16 Illumina HiSeq 4000 (Homo sapiens)
GSE162914 RNA-seq 211 Illumina HiSeq 2500 (Homo sapiens)
GSE187515 scRNA-seq 104 Illumina MiSeq (Homo sapiens);Illumina HiSeq 4000 (Homo sapiens);Illumina NovaSeq 6000 (Homo sapiens)
GSE279982 Methylation profiling (Array) 576 Infinium MethylationEPIC
C
  GSE144329 		ATAC-seq 96 NextSeq 550 (Homo sapiens)
GSE205204 RNA-seq 14 Illumina NovaSeq 6000 (Homo sapiens)
GSE125686 RNA-seq 62 Illumina HiSeq 2000 (Homo sapiens);Illumina HiSeq 2500 (Homo sapiens);Illumina NextSeq 500 (Homo sapiens)
S
  GSE198339 		scRNA-seq 8 Illumina NovaSeq 6000 (Homo sapiens)
S
  GSE233747 		scRNA-seq 40 Illumina NovaSeq 6000 (Homo sapiens)
C
  GSE220859 		Chip-seq 11 Illumina NovaSeq 6000 (Homo sapiens)
GSE165708 RNA-seq 100 Illumina HiSeq 4000 (Homo sapiens)
C
  GSE211651 		Chip-seq;RNA-seq;PRO-seq 39 Illumina NextSeq 500 (Homo sapiens);Illumina NovaSeq 6000 (Homo sapiens)
GSE198809 scRNA-seq 46 Illumina NovaSeq 6000 (Homo sapiens)
GSE68028 MeDIP-chip 1 NimbleGen Human DNA Methylation 2.1M Deluxe Promoter Array [100929_HG19_Deluxe_Prom_Meth_HX1]
C
  GSE100376 		ATAC-seq 24 Illumina NextSeq 500 (Homo sapiens)
GSE167211 RNA-seq 1 Illumina HiSeq 2000 (Homo sapiens)
GSE165132 RNA-seq 56 NextSeq 550 (Homo sapiens)
S
  GSE228078 		scRNA-seq 12 Illumina NovaSeq 6000 (Homo sapiens)
C
  GSE100266 		ATAC-seq;Chip-seq;RNA-seq 32 Illumina HiSeq 2500 (Homo sapiens)
C
  GSE165703 		ATAC-seq 82 Illumina HiSeq 4000 (Homo sapiens)
GSE148796 scRNA-seq 4 Illumina NextSeq 500 (Homo sapiens)
GSE246082 RNA-seq 6 Illumina HiSeq 4000 (Homo sapiens)


When the query gene is differentially changed in the dataset, a feature/violin plot will be displayed.


> Dataset: GSE198339 - Gene expression in cell subsets

> Dataset: GSE233747 - Gene expression in cell subsets

> Dataset: GSE228078 - Gene expression in cell subsets