HIV Target gene Detail Information

> FNBP1 Gene Search Result

Gene Information

Gene Name	FNBP1
Gene ID	23048
Gene Full Name	formin binding protein 1
Gene Alias	FBP17
Transcripts	ENSG00000187239
Virus	HIV
Gene Type	protein-coding
HPA Location Info	Plasma membrane;Vesicles;
Membrane Info	Disease related genes, Plasma proteins, Predicted intracellular proteins
Uniport_ID	Q96RU3
HGNC ID	HGNC:17069
OMIM ID	606191
Summary	The protein encoded by this gene is a member of the formin-binding-protein family. The protein contains an N-terminal Fer/Cdc42-interacting protein 4 (CIP4) homology (FCH) domain followed by a coiled-coil domain, a proline-rich motif, a second coiled-coil domain, a Rho family protein-binding domain (RBD), and a C-terminal SH3 domain. This protein binds sorting nexin 2 (SNX2), tankyrase (TNKS), and dynamin; an interaction between this protein and formin has not been demonstrated yet in human. [provided by RefSeq, Jul 2008]

Target gene [FNBP1] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section

DVID	Chromosome	HM	TFBS	CA	Sum of Overlapped Records	Detail
4000899	chr9	76	85	92	253	View
4000935	chr9	243	1	1	245	View
4001055	chr9	96	17	111	224	View
4001820	chr9	96	21	12	129	View
4002208	chr9	90	11	5	106	View
4002215	chr9	28	31	46	105	View
4002726	chr9	24	33	25	82	View
4002853	chr9	73	4	0	77	View
4002995	chr9	14	57	2	73	View
4003571	chr9	55	4	0	59	View
4003610	chr9	46	4	8	58	View
4004151	chr9	28	10	10	48	View
4004351	chr9	44	1	0	45	View
4004594	chr9	11	8	23	42	View
4005722	chr9	4	3	23	30	View
4005927	chr9	28	0	0	28	View
4006346	chr9	16	9	0	25	View
4006613	chr9	20	4	0	24	View
4006840	chr9	14	7	1	22	View
4007420	chr9	5	13	1	19	View
4008790	chr9	12	2	0	14	View
4008907	chr9	12	1	0	13	View
4009861	chr9	9	1	0	10	View
4010452	chr9	9	0	0	9	View
4010617	chr9	6	2	0	8	View
4010894	chr9	4	1	3	8	View
4011296	chr9	6	1	0	7	View
4011857	chr9	2	4	0	6	View
4011938	chr9	6	0	0	6	View
4012821	chr9	3	0	1	4	View
4013231	chr9	3	1	0	4	View
4014031	chr9	3	0	0	3	View
4014032	chr9	3	0	0	3	View
4014042	chr9	2	0	0	2	View
4014043	chr9	2	0	0	2	View
4014568	chr9	2	0	0	2	View

Target gene [FNBP1] related to Omics data

Data ID	Experiment type	Sample number	Platform
C GSE221688	Chip-seq;scATAC-Seq;scRNA-Seq	12	Illumina NovaSeq 6000 (Homo sapiens)
GSE99737	RNA-seq	9	Illumina HiSeq 2500 (Homo sapiens)
GSE144332	RNA-seq	75	NextSeq 550 (Homo sapiens)
GSE157829	scRNA-seq	7	Illumina HiSeq 2500 (Homo sapiens)
C GSE165705	Chip-seq	30	Illumina NovaSeq 6000 (Homo sapiens)
GSE164264	RNA-seq	6	BGISEQ-500 (Homo sapiens)
C GSE30738	Chip-seq	2	Illumina Genome Analyzer II (Homo sapiens)
GSE262621	RNA-seq	70	Illumina NovaSeq 6000 (Homo sapiens)
GSE202410	scRNA-seq	24	Illumina HiSeq 4000 (Homo sapiens)
GSE128121	RNA-seq	16	Illumina HiSeq 4000 (Homo sapiens)
GSE162914	RNA-seq	211	Illumina HiSeq 2500 (Homo sapiens)
GSE187515	scRNA-seq	104	Illumina MiSeq (Homo sapiens);Illumina HiSeq 4000 (Homo sapiens);Illumina NovaSeq 6000 (Homo sapiens)
GSE279982	Methylation profiling (Array)	576	Infinium MethylationEPIC
C GSE144329	ATAC-seq	96	NextSeq 550 (Homo sapiens)
GSE205204	RNA-seq	14	Illumina NovaSeq 6000 (Homo sapiens)
GSE125686	RNA-seq	62	Illumina HiSeq 2000 (Homo sapiens);Illumina HiSeq 2500 (Homo sapiens);Illumina NextSeq 500 (Homo sapiens)
GSE198339	scRNA-seq	8	Illumina NovaSeq 6000 (Homo sapiens)
GSE233747	scRNA-seq	40	Illumina NovaSeq 6000 (Homo sapiens)
C GSE220859	Chip-seq	11	Illumina NovaSeq 6000 (Homo sapiens)
GSE165708	RNA-seq	100	Illumina HiSeq 4000 (Homo sapiens)
C GSE211651	Chip-seq;RNA-seq;PRO-seq	39	Illumina NextSeq 500 (Homo sapiens);Illumina NovaSeq 6000 (Homo sapiens)
GSE198809	scRNA-seq	46	Illumina NovaSeq 6000 (Homo sapiens)
GSE68028	MeDIP-chip	1	NimbleGen Human DNA Methylation 2.1M Deluxe Promoter Array [100929_HG19_Deluxe_Prom_Meth_HX1]
C GSE100376	ATAC-seq	24	Illumina NextSeq 500 (Homo sapiens)
GSE167211	RNA-seq	1	Illumina HiSeq 2000 (Homo sapiens)
GSE165132	RNA-seq	56	NextSeq 550 (Homo sapiens)
GSE228078	scRNA-seq	12	Illumina NovaSeq 6000 (Homo sapiens)
C GSE100266	ATAC-seq;Chip-seq;RNA-seq	32	Illumina HiSeq 2500 (Homo sapiens)
C GSE165703	ATAC-seq	82	Illumina HiSeq 4000 (Homo sapiens)
GSE148796	scRNA-seq	4	Illumina NextSeq 500 (Homo sapiens)
GSE246082	RNA-seq	6	Illumina HiSeq 4000 (Homo sapiens)

Genome binding/occupancy profiling

When the gene can detect a peak in the dataset, a peak plot will be displayed.

> Dataset: GSE221688 - FNBP1 peak across samples
Peak Plot
> Dataset: GSE165705 - FNBP1 peak across samples
Peak Plot
> Dataset: GSE30738 - FNBP1 peak across samples
Peak Plot
> Dataset: GSE144329 - FNBP1 peak across samples
Peak Plot
> Dataset: GSE220859 - FNBP1 peak across samples
Peak Plot
> Dataset: GSE211651 - FNBP1 peak across samples
Peak Plot
> Dataset: GSE100376 - FNBP1 peak across samples
Peak Plot
> Dataset: GSE100266 - FNBP1 peak across samples
Peak Plot
> Dataset: GSE165703 - FNBP1 peak across samples
Peak Plot

> FNBP1 Gene Search Result

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section

When the gene can detect a peak in the dataset, a peak plot will be displayed.

> Dataset: GSE221688 - FNBP1 peak across samples

Peak Plot

> Dataset: GSE165705 - FNBP1 peak across samples

Peak Plot

> Dataset: GSE30738 - FNBP1 peak across samples

Peak Plot

> Dataset: GSE144329 - FNBP1 peak across samples

Peak Plot

> Dataset: GSE220859 - FNBP1 peak across samples

Peak Plot

> Dataset: GSE211651 - FNBP1 peak across samples

Peak Plot

> Dataset: GSE100376 - FNBP1 peak across samples

Peak Plot

> Dataset: GSE100266 - FNBP1 peak across samples

Peak Plot

> Dataset: GSE165703 - FNBP1 peak across samples

Peak Plot