HIV Target gene Detail Information

> GRB2 Gene Search Result


Gene Information
Gene Name GRB2
Gene ID 2885
Gene Full Name growth factor receptor bound protein 2
Gene Alias ASH|EGFRBP-GRB2|Grb3-3|MST084|MSTP084|NCKAP2
Transcripts ENSG00000177885
Virus HIV
Gene Type protein-coding
HPA Location Info Cytosol;Primary cilium, Centrosome;
Membrane Info Cancer-related genes, Plasma proteins, Predicted intracellular proteins, RAS pathway related proteins
Uniport_ID P62993
HGNC ID HGNC:4566
OMIM ID 108355
Summary The protein encoded by this gene binds the epidermal growth factor receptor and contains one SH2 domain and two SH3 domains. Its two SH3 domains direct complex formation with proline-rich regions of other proteins, and its SH2 domain binds tyrosine phosphorylated sequences. This gene is similar to the Sem5 gene of C.elegans, which is involved in the signal transduction pathway. Two alternatively spliced transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Jul 2008]
Target gene [GRB2] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
4000412 chr17 82 282 120 484 View
4000480 chr17 89 262 83 434 View
4002543 chr17 89 0 1 90 View
4002871 chr17 73 3 1 77 View
4003422 chr17 61 1 0 62 View
4003669 chr17 35 16 5 56 View
4003679 chr17 55 1 0 56 View
4005883 chr17 20 9 0 29 View
4006030 chr17 13 14 0 27 View
4006337 chr17 24 1 0 25 View
4006567 chr17 6 6 12 24 View
4007751 chr17 4 14 0 18 View
4008945 chr17 1 8 4 13 View
4009937 chr17 7 3 0 10 View
4012922 chr17 3 1 0 4 View
4014165 chr17 2 0 0 2 View
4014166 chr17 2 0 0 2 View

Target gene [GRB2] related to Omics data
Data ID Experiment type Sample number Platform
C
  GSE221688
Chip-seq;scATAC-Seq;scRNA-Seq 12 Illumina NovaSeq 6000 (Homo sapiens)
GSE99737 RNA-seq 9 Illumina HiSeq 2500 (Homo sapiens)
GSE144332 RNA-seq 75 NextSeq 550 (Homo sapiens)
GSE157829 scRNA-seq 7 Illumina HiSeq 2500 (Homo sapiens)
C
  GSE165705
Chip-seq 30 Illumina NovaSeq 6000 (Homo sapiens)
GSE164264 RNA-seq 6 BGISEQ-500 (Homo sapiens)
C
  GSE30738
Chip-seq 2 Illumina Genome Analyzer II (Homo sapiens)
GSE262621 RNA-seq 70 Illumina NovaSeq 6000 (Homo sapiens)
GSE202410 scRNA-seq 24 Illumina HiSeq 4000 (Homo sapiens)
GSE128121 RNA-seq 16 Illumina HiSeq 4000 (Homo sapiens)
GSE162914 RNA-seq 211 Illumina HiSeq 2500 (Homo sapiens)
GSE187515 scRNA-seq 104 Illumina MiSeq (Homo sapiens);Illumina HiSeq 4000 (Homo sapiens);Illumina NovaSeq 6000 (Homo sapiens)
GSE279982 Methylation profiling (Array) 576 Infinium MethylationEPIC
C
  GSE144329
ATAC-seq 96 NextSeq 550 (Homo sapiens)
GSE205204 RNA-seq 14 Illumina NovaSeq 6000 (Homo sapiens)
GSE125686 RNA-seq 62 Illumina HiSeq 2000 (Homo sapiens);Illumina HiSeq 2500 (Homo sapiens);Illumina NextSeq 500 (Homo sapiens)
GSE198339 scRNA-seq 8 Illumina NovaSeq 6000 (Homo sapiens)
GSE233747 scRNA-seq 40 Illumina NovaSeq 6000 (Homo sapiens)
C
  GSE220859
Chip-seq 11 Illumina NovaSeq 6000 (Homo sapiens)
GSE165708 RNA-seq 100 Illumina HiSeq 4000 (Homo sapiens)
C
  GSE211651
Chip-seq;RNA-seq;PRO-seq 39 Illumina NextSeq 500 (Homo sapiens);Illumina NovaSeq 6000 (Homo sapiens)
GSE198809 scRNA-seq 46 Illumina NovaSeq 6000 (Homo sapiens)
GSE68028 MeDIP-chip 1 NimbleGen Human DNA Methylation 2.1M Deluxe Promoter Array [100929_HG19_Deluxe_Prom_Meth_HX1]
C
  GSE100376
ATAC-seq 24 Illumina NextSeq 500 (Homo sapiens)
GSE167211 RNA-seq 1 Illumina HiSeq 2000 (Homo sapiens)
GSE165132 RNA-seq 56 NextSeq 550 (Homo sapiens)
GSE228078 scRNA-seq 12 Illumina NovaSeq 6000 (Homo sapiens)
C
  GSE100266
ATAC-seq;Chip-seq;RNA-seq 32 Illumina HiSeq 2500 (Homo sapiens)
C
  GSE165703
ATAC-seq 82 Illumina HiSeq 4000 (Homo sapiens)
GSE148796 scRNA-seq 4 Illumina NextSeq 500 (Homo sapiens)
GSE246082 RNA-seq 6 Illumina HiSeq 4000 (Homo sapiens)


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE221688 - GRB2 peak across samples

Peak Plot


> Dataset: GSE165705 - GRB2 peak across samples

Peak Plot


> Dataset: GSE30738 - GRB2 peak across samples

Peak Plot


> Dataset: GSE144329 - GRB2 peak across samples

Peak Plot


> Dataset: GSE220859 - GRB2 peak across samples

Peak Plot


> Dataset: GSE211651 - GRB2 peak across samples

Peak Plot


> Dataset: GSE100376 - GRB2 peak across samples

Peak Plot


> Dataset: GSE100266 - GRB2 peak across samples

Peak Plot


> Dataset: GSE165703 - GRB2 peak across samples

Peak Plot