HIV Target gene Detail Information

> HNRNPM Gene Search Result


Gene Information
Gene Name HNRNPM
Gene ID 4670
Gene Full Name heterogeneous nuclear ribonucleoprotein M
Gene Alias CEAR|HNRNPM4|HNRPM|HNRPM4|HTGR1|NAGR1|hnRNP M
Transcripts ENSG00000099783
Virus HIV
Gene Type protein-coding
HPA Location Info Nucleoplasm;
Membrane Info Plasma proteins, Predicted intracellular proteins
Uniport_ID P52272
HGNC ID HGNC:5046
OMIM ID 160994
Summary This gene belongs to the subfamily of ubiquitously expressed heterogeneous nuclear ribonucleoproteins (hnRNPs). The hnRNPs are RNA binding proteins and they complex with heterogeneous nuclear RNA (hnRNA). These proteins are associated with pre-mRNAs in the nucleus and appear to influence pre-mRNA processing and other aspects of mRNA metabolism and transport. While all of the hnRNPs are present in the nucleus, some seem to shuttle between the nucleus and the cytoplasm. The hnRNP proteins have distinct nucleic acid binding properties. The protein encoded by this gene has three repeats of quasi-RRM domains that bind to RNAs. This protein also constitutes a monomer of the N-acetylglucosamine-specific receptor which is postulated to trigger selective recycling of immature GlcNAc-bearing thyroglobulin molecules. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Aug 2011]
Target gene [HNRNPM] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
4000187 chr19 243 365 185 793 View
4000243 chr19 367 196 95 658 View
4001466 chr19 89 17 55 161 View
4002031 chr19 59 51 6 116 View
4002033 chr19 59 51 6 116 View
4002043 chr19 46 12 58 116 View
4002044 chr19 46 12 58 116 View
4002092 chr19 44 11 58 113 View
4002114 chr19 15 44 52 111 View
4002128 chr19 42 11 58 111 View
4002255 chr19 38 8 57 103 View
4002455 chr19 31 8 55 94 View
4002643 chr19 24 8 54 86 View
4002736 chr19 23 8 51 82 View
4003134 chr19 16 7 46 69 View
4003170 chr19 16 6 46 68 View
4003260 chr19 2 54 9 65 View
4004723 chr19 39 1 0 40 View
4004751 chr19 9 4 27 40 View
4005052 chr19 33 3 0 36 View
4005360 chr19 29 4 0 33 View
4005737 chr19 20 9 1 30 View
4006107 chr19 27 0 0 27 View
4006965 chr19 7 12 2 21 View
4006966 chr19 7 12 2 21 View
4006967 chr19 7 12 2 21 View
4006968 chr19 7 12 2 21 View
4007846 chr19 16 0 1 17 View
4007847 chr19 3 2 12 17 View
4008008 chr19 6 1 10 17 View
4008201 chr19 12 4 0 16 View
4008540 chr19 6 1 8 15 View
4009079 chr19 5 1 7 13 View
4009383 chr19 5 1 6 12 View
4009745 chr19 5 1 5 11 View
4010376 chr19 7 2 0 9 View
4010964 chr19 5 1 2 8 View
4010965 chr19 5 1 2 8 View
4011461 chr19 5 1 1 7 View

Target gene [HNRNPM] related to Omics data
Data ID Experiment type Sample number Platform
C
  GSE221688 		Chip-seq;scATAC-Seq;scRNA-Seq 12 Illumina NovaSeq 6000 (Homo sapiens)
GSE99737 RNA-seq 9 Illumina HiSeq 2500 (Homo sapiens)
GSE144332 RNA-seq 75 NextSeq 550 (Homo sapiens)
GSE157829 scRNA-seq 7 Illumina HiSeq 2500 (Homo sapiens)
C
  GSE165705 		Chip-seq 30 Illumina NovaSeq 6000 (Homo sapiens)
GSE164264 RNA-seq 6 BGISEQ-500 (Homo sapiens)
C
  GSE30738 		Chip-seq 2 Illumina Genome Analyzer II (Homo sapiens)
GSE262621 RNA-seq 70 Illumina NovaSeq 6000 (Homo sapiens)
GSE202410 scRNA-seq 24 Illumina HiSeq 4000 (Homo sapiens)
GSE128121 RNA-seq 16 Illumina HiSeq 4000 (Homo sapiens)
GSE162914 RNA-seq 211 Illumina HiSeq 2500 (Homo sapiens)
GSE187515 scRNA-seq 104 Illumina MiSeq (Homo sapiens);Illumina HiSeq 4000 (Homo sapiens);Illumina NovaSeq 6000 (Homo sapiens)
GSE279982 Methylation profiling (Array) 576 Infinium MethylationEPIC
C
  GSE144329 		ATAC-seq 96 NextSeq 550 (Homo sapiens)
GSE205204 RNA-seq 14 Illumina NovaSeq 6000 (Homo sapiens)
GSE125686 RNA-seq 62 Illumina HiSeq 2000 (Homo sapiens);Illumina HiSeq 2500 (Homo sapiens);Illumina NextSeq 500 (Homo sapiens)
GSE198339 scRNA-seq 8 Illumina NovaSeq 6000 (Homo sapiens)
GSE233747 scRNA-seq 40 Illumina NovaSeq 6000 (Homo sapiens)
C
  GSE220859 		Chip-seq 11 Illumina NovaSeq 6000 (Homo sapiens)
GSE165708 RNA-seq 100 Illumina HiSeq 4000 (Homo sapiens)
C
  GSE211651 		Chip-seq;RNA-seq;PRO-seq 39 Illumina NextSeq 500 (Homo sapiens);Illumina NovaSeq 6000 (Homo sapiens)
GSE198809 scRNA-seq 46 Illumina NovaSeq 6000 (Homo sapiens)
GSE68028 MeDIP-chip 1 NimbleGen Human DNA Methylation 2.1M Deluxe Promoter Array [100929_HG19_Deluxe_Prom_Meth_HX1]
C
  GSE100376 		ATAC-seq 24 Illumina NextSeq 500 (Homo sapiens)
GSE167211 RNA-seq 1 Illumina HiSeq 2000 (Homo sapiens)
GSE165132 RNA-seq 56 NextSeq 550 (Homo sapiens)
GSE228078 scRNA-seq 12 Illumina NovaSeq 6000 (Homo sapiens)
C
  GSE100266 		ATAC-seq;Chip-seq;RNA-seq 32 Illumina HiSeq 2500 (Homo sapiens)
C
  GSE165703 		ATAC-seq 82 Illumina HiSeq 4000 (Homo sapiens)
S
  GSE148796 		scRNA-seq 4 Illumina NextSeq 500 (Homo sapiens)
GSE246082 RNA-seq 6 Illumina HiSeq 4000 (Homo sapiens)


When the query gene is differentially changed in the dataset, a feature/violin plot will be displayed.


> Dataset: GSE148796 - Gene expression in cell subsets