HIV Target gene Detail Information

> VMP1 Gene Search Result


Gene Information
Gene Name VMP1
Gene ID 81671
Gene Full Name vacuole membrane protein 1
Gene Alias EPG3|TANGO5|TMEM49
Transcripts ENSG00000062716
Virus HIV
Gene Type protein-coding
HPA Location Info Endoplasmic reticulum;Nucleoli;
Membrane Info Predicted intracellular proteins, Predicted membrane proteins, Transporters
Uniport_ID Q96GC9
HGNC ID HGNC:29559
OMIM ID 611753
Summary This gene encodes a transmembrane protein that plays a key regulatory role in the process of autophagy. The ectopic overexpression of the encoded protein in cultured cells triggers autophagy even under nutrient-rich conditions. This gene is overexpressed in pancreatitis affected acinar cells where the encoded protein mediates sequestration and degradation of potentially deleterious activated zymogen granules in a process termed, zymophagy. [provided by RefSeq, Jul 2016]
Target gene [VMP1] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
4000056 chr17 967 313 255 1535 View
4000061 chr17 889 292 269 1450 View
4000835 chr17 70 92 107 269 View
4001215 chr17 59 93 40 192 View
4002534 chr17 37 51 2 90 View
4002558 chr17 23 13 53 89 View
4002567 chr17 89 0 0 89 View
4002881 chr17 49 10 17 76 View
4002885 chr17 74 2 0 76 View
4003415 chr17 2 32 28 62 View
4003752 chr17 10 45 0 55 View
4004391 chr17 8 37 0 45 View
4004627 chr17 26 13 2 41 View
4004800 chr17 26 4 9 39 View
4004972 chr17 35 2 0 37 View
4005065 chr17 34 2 0 36 View
4006531 chr17 12 12 0 24 View
4008487 chr17 8 7 0 15 View
4009454 chr17 8 3 0 11 View
4010042 chr17 8 2 0 10 View
4010845 chr17 1 7 0 8 View
4011458 chr17 6 1 0 7 View
4011459 chr17 6 1 0 7 View
4011893 chr17 4 2 0 6 View
4012014 chr17 5 0 0 5 View
4012918 chr17 3 1 0 4 View
4013524 chr17 2 1 0 3 View

Target gene [VMP1] related to Omics data
Data ID Experiment type Sample number Platform
C
  GSE221688 		Chip-seq;scATAC-Seq;scRNA-Seq 12 Illumina NovaSeq 6000 (Homo sapiens)
GSE99737 RNA-seq 9 Illumina HiSeq 2500 (Homo sapiens)
GSE144332 RNA-seq 75 NextSeq 550 (Homo sapiens)
S
  GSE157829 		scRNA-seq 7 Illumina HiSeq 2500 (Homo sapiens)
C
  GSE165705 		Chip-seq 30 Illumina NovaSeq 6000 (Homo sapiens)
GSE164264 RNA-seq 6 BGISEQ-500 (Homo sapiens)
C
  GSE30738 		Chip-seq 2 Illumina Genome Analyzer II (Homo sapiens)
GSE262621 RNA-seq 70 Illumina NovaSeq 6000 (Homo sapiens)
S
  GSE202410 		scRNA-seq 24 Illumina HiSeq 4000 (Homo sapiens)
GSE128121 RNA-seq 16 Illumina HiSeq 4000 (Homo sapiens)
GSE162914 RNA-seq 211 Illumina HiSeq 2500 (Homo sapiens)
GSE187515 scRNA-seq 104 Illumina MiSeq (Homo sapiens);Illumina HiSeq 4000 (Homo sapiens);Illumina NovaSeq 6000 (Homo sapiens)
GSE279982 Methylation profiling (Array) 576 Infinium MethylationEPIC
C
  GSE144329 		ATAC-seq 96 NextSeq 550 (Homo sapiens)
GSE205204 RNA-seq 14 Illumina NovaSeq 6000 (Homo sapiens)
GSE125686 RNA-seq 62 Illumina HiSeq 2000 (Homo sapiens);Illumina HiSeq 2500 (Homo sapiens);Illumina NextSeq 500 (Homo sapiens)
S
  GSE198339 		scRNA-seq 8 Illumina NovaSeq 6000 (Homo sapiens)
GSE233747 scRNA-seq 40 Illumina NovaSeq 6000 (Homo sapiens)
C
  GSE220859 		Chip-seq 11 Illumina NovaSeq 6000 (Homo sapiens)
GSE165708 RNA-seq 100 Illumina HiSeq 4000 (Homo sapiens)
C
  GSE211651 		Chip-seq;RNA-seq;PRO-seq 39 Illumina NextSeq 500 (Homo sapiens);Illumina NovaSeq 6000 (Homo sapiens)
GSE198809 scRNA-seq 46 Illumina NovaSeq 6000 (Homo sapiens)
GSE68028 MeDIP-chip 1 NimbleGen Human DNA Methylation 2.1M Deluxe Promoter Array [100929_HG19_Deluxe_Prom_Meth_HX1]
C
  GSE100376 		ATAC-seq 24 Illumina NextSeq 500 (Homo sapiens)
GSE167211 RNA-seq 1 Illumina HiSeq 2000 (Homo sapiens)
GSE165132 RNA-seq 56 NextSeq 550 (Homo sapiens)
GSE228078 scRNA-seq 12 Illumina NovaSeq 6000 (Homo sapiens)
C
  GSE100266 		ATAC-seq;Chip-seq;RNA-seq 32 Illumina HiSeq 2500 (Homo sapiens)
C
  GSE165703 		ATAC-seq 82 Illumina HiSeq 4000 (Homo sapiens)
S
  GSE148796 		scRNA-seq 4 Illumina NextSeq 500 (Homo sapiens)
GSE246082 RNA-seq 6 Illumina HiSeq 4000 (Homo sapiens)


When the query gene is differentially changed in the dataset, a feature/violin plot will be displayed.


> Dataset: GSE157829 - Gene expression in cell subsets

> Dataset: GSE202410 - Gene expression in cell subsets

> Dataset: GSE198339 - Gene expression in cell subsets

> Dataset: GSE148796 - Gene expression in cell subsets